Molecular & Cellular Proteomics
35 papers in the catalog
35 de novo peptide sequencing papers published in Molecular & Cellular Proteomics, catalogued with authors, methods and citation counts.
| 2-year mean citedness | 4.69 |
| h-index | 243 |
| Works indexed | 6144 |
From OpenAlex. The 2-year mean citedness is computed the same way as the Journal Impact Factor, but over the open citation graph.
Papers
- Mass Spectrometry-Based De Novo Sequencing of N-Glycosylated Light Chains: Linking Urinary Proteoforms to In Situ Renal Amyloid Deposits (2026, peer-reviewed)
- Generalizable Direct Protein Sequencing With InstaNexus (2026, peer-reviewed)
- Modanovo: A Unified Model for Post-translational Modification-Aware De Novo Sequencing Using Experimental Spectra From In Vivo and Synthetic Peptides (2025, peer-reviewed)
- Sequencing of Polyclonal Antibodies by Integrating Intact Mass, Middle–Down, and De Novo Bottom–Up Mass Spectrometry (2025, peer-reviewed)
- The Hunt Lab Guide to De Novo Peptide Sequence Analysis by Tandem Mass Spectrometry (2024, peer-reviewed)
- NovoBoard: A Comprehensive Framework for Evaluating the False Discovery Rate and Accuracy of De Novo Peptide Sequencing (2024, peer-reviewed)
- pXg: Comprehensive Identification of Noncanonical MHC-I-Associated Peptides From De Novo Peptide Sequencing Using RNA-Seq Reads (2024, peer-reviewed)
- Into the Dark Serum Proteome: Personalized Features of IgG1 and IgA1 Repertoires in Severe COVID-19 Patients (2024, peer-reviewed)
- MS2Rescore: Data-Driven Rescoring Dramatically Boosts Immunopeptide Identification Rates (2022, peer-reviewed)
- Proteogenomic Analysis Unveils the HLA Class I-Presented Immunopeptidome in Melanoma and EGFR-Mutant Lung Adenocarcinoma (2021, peer-reviewed)
- The Choice of Search Engine Affects Sequencing Depth and HLA Class I Allele-Specific Peptide Repertoires (2021, peer-reviewed)
- ProAlanase is an Effective Alternative to Trypsin for Proteomics Applications and Disulfide Bond Mapping (2020, peer-reviewed)
- Assessing Protein Sequence Database Suitability Using De Novo Sequencing (2020, peer-reviewed)
- Uncovering Thousands of New Peptides with Sequence-Mask-Search Hybrid De Novo Peptide Sequencing Framework (2019, peer-reviewed)
- Precision De Novo Peptide Sequencing Using Mirror Proteases of Ac-LysargiNase and Trypsin for Large-scale Proteomics (2019, peer-reviewed)
- Estimating the Contribution of Proteasomal Spliced Peptides to the HLA-I Ligandome* (2018, peer-reviewed)
- Database-independent Protein Sequencing (DiPS) Enables Full-length de Novo Protein and Antibody Sequence Determination (2017, peer-reviewed)
- JUMP: A Tag-based Database Search Tool for Peptide Identification with High Sensitivity and Accuracy (2014, peer-reviewed)
- PepExplorer: A Similarity-driven Tool for Analyzing de Novo Sequencing Results (2014, peer-reviewed)
- Neutron-encoded Signatures Enable Product Ion Annotation From Tandem Mass Spectra (2013, peer-reviewed)
- High-definition De Novo Sequencing of Crustacean Hyperglycemic Hormone (CHH)-family Neuropeptides (2012, peer-reviewed)
- Shotgun Protein Sequencing with Meta-contig Assembly (2012, peer-reviewed)
- PEAKS DB: De Novo Sequencing Assisted Database Search for Sensitive and Accurate Peptide Identification (2012, peer-reviewed)
- De Novo Sequencing and Homology Searching (2012, peer-reviewed)
- Gapped Spectral Dictionaries and Their Applications for Database Searches of Tandem Mass Spectra (2011, peer-reviewed)
- Template Proteogenomics: Sequencing Whole Proteins Using an Imperfect Database (2010, peer-reviewed)
- Rapid Validation of Mascot Search Results via Stable Isotope Labeling, Pair Picking, and Deconvolution of Fragmentation Patterns (2009, peer-reviewed)
- Spectral Profiles, a Novel Representation of Tandem Mass Spectra and Their Applications for de Novo Peptide Sequencing and Identification (2009, peer-reviewed)
- Straightforward and de Novo Peptide Sequencing by MALDI-MS/MS Using a Lys-N Metalloendopeptidase (2009, peer-reviewed)
- Spectral Dictionaries: Integrating de novo Peptide Sequencing with Database Search of Tandem Mass Spectra (2009, peer-reviewed)
- Unrestrictive Identification of Multiple Post-translational Modifications from Tandem Mass Spectrometry Using an Error-tolerant Algorithm Based on an Extended Sequence Tag Approach (2008, peer-reviewed)
- Shotgun Protein Sequencing: Assembly of Peptide Tandem Mass Spectra from Mixtures of Modified Proteins (2007, peer-reviewed)
- The Diversity of Bioactive Proteins in Australian Snake Venoms (2007, peer-reviewed)
- Molecular Diversity in Venom from the Australian Brown Snake, Pseudonaja textilis (2006, peer-reviewed)
- The Power and the Limitations of Cross-Species Protein Identification by Mass Spectrometry-driven Sequence Similarity Searches (2004, peer-reviewed)