Core interpretations (Bafna-Edwards)

algorithm · Graph / DP

Core interpretations (Bafna-Edwards): algorithm · Graph / DP. A dynamic programming de novo algorithm that assigns ion types (a, b, y and neutral losses) to peaks and introduces core interpretations to give confidence values to…

A dynamic programming de novo algorithm that assigns ion types (a, b, y and neutral losses) to peaks and introduces core interpretations to give confidence values to parts of a sequence.

Kind	algorithm
Deep learning	no
Acquisition	DDA
Family	Graph / DP

Paper describing it

• On de novo interpretation of tandem mass spectra for peptide identification (2003, Proceedings of the seventh annual international conference on Research in computational molecular biology, peer-reviewed)

Authors (2)

Vineet Bafna, Nathan Edwards

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