Vineet Bafna

6 papers in the catalog · USA, La Jolla

Vineet Bafna: 6 papers in the catalog · USA, La Jolla · University of California San Diego, University of California San Diego · Works on Core interpretations (Bafna-Edwards), InsPecT, Sequence-tag filtration for database search

Affiliations

University of California San Diego
University of California San Diego · Department of Bioengineering and Computer Science Department
University of California San Diego · Department of Computer Science and Engineering

Elsewhere

ORCID 0000-0002-5810-6241 · OpenAlex

Papers

Resurrection of a clinical antibody: Template proteogenomic de novo proteomic sequencing and reverse engineering of an anti‐lymphotoxin‐α antibody (2011, PROTEOMICS)
Template Proteogenomics: Sequencing Whole Proteins Using an Imperfect Database (2010, Molecular & Cellular Proteomics)
Peptide Sequence Tags for Fast Database Search in Mass-Spectrometry (2005, Journal of Proteome Research)
InsPecT: Identification of Posttranslationally Modified Peptides from Tandem Mass Spectra (2005, Analytical Chemistry)
Shotgun Protein Sequencing by Tandem Mass Spectra Assembly (2004, Analytical Chemistry)
On de novo interpretation of tandem mass spectra for peptide identification (2003, Proceedings of the seventh annual international conference on Research in computational molecular biology)

Methods and tools

Core interpretations (Bafna-Edwards), InsPecT, Sequence-tag filtration for database search, Shotgun Protein Sequencing, Template proteogenomic antibody resurrection, Template proteogenomics

Co-authors (21)

Ranked by Newman fractional collaboration strength, so a pair on a two-author paper counts for more than a pair on a 50-author consortium paper.

Nathan Edwards strength 1.00, 1 shared
Pavel A. Pevzner strength 0.81, 3 shared
Ari Frank strength 0.48, 2 shared
Stephen Tanner strength 0.48, 2 shared
David Arnott strength 0.34, 2 shared
Jennie R. Lill strength 0.34, 2 shared
Natalie Castellana strength 0.34, 2 shared
Victoria Pham strength 0.34, 2 shared
Haixu Tang strength 0.33, 1 shared
Nuno Bandeira strength 0.33, 1 shared
Ebrahim Zandi strength 0.14, 1 shared
Hongjun Shu strength 0.14, 1 shared
Ling-Chi Wang strength 0.14, 1 shared
Marc Mumby strength 0.14, 1 shared
Allen Nguyen strength 0.09, 1 shared
Camellia Adams strength 0.09, 1 shared
Jane L. Grogan strength 0.09, 1 shared
Judy Young strength 0.09, 1 shared
Krista McCutcheon strength 0.09, 1 shared
Kristin Harden strength 0.09, 1 shared
Kurt Schroeder strength 0.09, 1 shared

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