NovoLign
downstream-application
NovoLign: downstream-application. Aligns de novo sequences from whole metaproteomics experiments to give rapid taxonomic profiles and to check the coverage of database search results.
Aligns de novo sequences from whole metaproteomics experiments to give rapid taxonomic profiles and to check the coverage of database search results.
| Kind | downstream-application |
| Deep learning | no |
| Acquisition | DDA |
| Application area | Metaproteomics |
Code
Live stars, open issues and last-push figures are on the Code activity chart.
Data
What the papers describing this method trained it on and reported its results on, as each paper states it. A version is named only where the paper names one.
Deposited
Also used, purpose not recorded
- Critical Assessment of Metaproteome Investigation (CAMPI): a Multi-Lab Comparison of Established Workflows (as deposited) · 2024 peer-reviewed, 2024 preprint
- Quantification of mock microbial communities with metagenomes, 16S rRNA gene amplicons and metaproteomics (as deposited) · 2024 peer-reviewed, 2024 preprint
Papers describing it (2)
- NovoLign: metaproteomics by sequence alignment (2024, bioRxiv, preprint)
- NovoLign: metaproteomics by sequence alignment (2024, ISME Communications, peer-reviewed)