Critical Assessment of Metaproteome Investigation (CAMPI): a Multi-Lab Comparison of Established Workflows
benchmark · DDA · 1 version · 5 papers
CAMPI metaproteomics: a simplified human gut microbiome model (SIHUMIx) plus faecal samples, where the database a search would need is the thing de novo does without.
| Kind | benchmark |
| Acquisition | DDA |
| Organisms | Escherichia coli, Homo sapiens (human) |
CAMPI metaproteomics: a simplified human gut microbiome model (SIHUMIx) plus faecal samples, where the database a search would need is the thing de novo does without.
Versions
as deposited
Where it lives:
- PRIDE · PXD023217
Used by (5)
- FastaLake selects compact metaproteomic databases from large sequence reservoirs by de novo peptide lookup (2026) preprint as deposited
- A living proteomics benchmark for comprehensive evaluation of deep learning-based de novo peptide sequencing tools (2026) preprint as deposited
- Limitations of de novo sequencing in resolving sequence ambiguity (2025) preprint as deposited
- NovoLign: metaproteomics by sequence alignment (2024) preprint as deposited
- NovoLign: metaproteomics by sequence alignment (2024) peer-reviewed as deposited
Methods on these papers (4)
- De novo sequence-ambiguity benchmark benchmark
- FastaLake downstream-application
- Living proteomics benchmark benchmark
- NovoLign downstream-application
Taken from the describing links only, so a paper that merely ran a tool on this data does not make that tool a method of it.