Pairwise

algorithm · Transformer (AR)

Pairwise: algorithm · Transformer (AR). Mass difference attention

Mass difference attention

Kind	algorithm
Family	Transformer (AR)
Deep learning	yes
Acquisition	DDA

Code

• https://github.com/statisticalbiotechnology/pairwise

Live stars, open issues and last-push figures are on the Code activity chart.

Papers

• Pairwise Attention: Leveraging Mass Differences to Enhance De Novo Sequencing of Mass Spectra (2025, Journal of Proteome Research, peer-reviewed)
• Pairwise Attention: Leveraging Mass Differences to Enhance De Novo Sequencing of Mass Spectra (2025, bioRxiv, preprint)

Authors (4)

Joel Lapin, Alfred Nilsson, Mathias Wilhelm, Lukas Käll

Seen in the charts

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