SPIDER
adjacent · Homology search
SPIDER: adjacent · Homology search. Protein identification from sequence tags while accounting for de novo sequencing error.
Protein identification from sequence tags while accounting for de novo sequencing error.
| Kind | adjacent |
| Deep learning | no |
| Acquisition | DDA |
| Family | Homology search |
Papers describing it (2)
- SPIDER: software for protein identification from sequence tags with de novo sequencing error (2005, Journal of Bioinformatics and Computational Biology, peer-reviewed)
- SPIDER: Reconstructive Protein Homology Search with De Novo Sequencing Tags (2011, thesis)
Papers using it (13)
Applications and evaluations that ran this method. They are not counted among its authors below.
- Ancient proteins identify various Denisovan remains from Southwest China (2026, Nature, peer-reviewed)
- The proteome of the late Middle Pleistocene Harbin individual (2025, Science, peer-reviewed)
- Unveiling the peptidome diversity of Lachesis muta snake venom: Discovery of novel fragments of metalloproteinase, l-amino acid oxidase, and bradykinin potentiating peptides (2023, Biochemical and Biophysical Research Communications, peer-reviewed)
- Meta-proteomic analysis of two mammoth’s trunks by EVA technology and high-resolution mass spectrometry for an indirect picture of their habitat and the characterization of the collagen type I, alpha-1 and alpha-2 sequence (2022, Amino Acids, peer-reviewed)
- Protein Identification Strategies for the Greenshell Mussel Perna canaliculus (2021, thesis)
- Quantitative proteomic comparison of salt stress in Chlamydomonas reinhardtii and the snow alga Chlamydomonas nivalis reveals mechanisms for salt-triggered fatty acid accumulation via reallocation of carbon resources (2021, Biotechnology for Biofuels, peer-reviewed)
- Comparative gender peptidomics of Bothrops atrox venoms: are there differences between them? (2020, Journal of Venomous Animals and Toxins including Tropical Diseases, peer-reviewed)
- Palaeoproteomics gives new insight into early southern African pastoralism (2020, Scientific Reports, peer-reviewed)
- ’Palaeoshellomics’ reveals the use of freshwater mother-of-pearl in prehistory (2019, eLife, peer-reviewed)
- Metaproteomics reveals potential mechanisms by which dietary resistant starch supplementation attenuates chronic kidney disease progression in rats (2019, PLOS ONE, peer-reviewed)
- Disentangling thermal stress responses in a reef-calcifier and its photosymbionts by shotgun proteomics (2018, Scientific Reports, peer-reviewed)
- Peptidomics of Acanthoscurria gomesiana spider venom reveals new toxins with potential antimicrobial activity (2017, Journal of Proteomics, peer-reviewed)
- Rescuing discarded spectra: Full comprehensive analysis of a minimal proteome (2016, PROTEOMICS, peer-reviewed)