DiaTrans

algorithm · Transformer (AR)

DiaTrans: algorithm · Transformer (AR). Transformer for DIA

Transformer for DIA

Kind	algorithm
Family	Transformer (AR)
Deep learning	yes
Acquisition	DIA
Also known as	Casanovo-DIA, Transformer-DIA

Code

• https://github.com/Biocomputing-Research-Group/Transformer-DIA

Live stars, open issues and last-push figures are on the Code activity chart.

Papers

• De Novo Peptide Sequencing for Data-independent Acquisition (DIA) Using Deep Learning (2025, thesis)
• Transformer-Based De Novo Peptide Sequencing for Data-Independent Acquisition Mass Spectrometry (2024, arXiv, postprint)
• Transformer-Based De Novo Peptide Sequencing for Data-Independent Acquisition Mass Spectrometry (2023, 2023 IEEE 23rd International Conference on Bioinformatics and Bioengineering (BIBE), peer-reviewed)

Authors (2)

Shiva Ebrahimi, Xuan Guo

Seen in the charts

• The architectures
• Code activity
• Models and the authors behind them

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