Si-Min He

7 papers in the catalog · China, Shanghai, Hangzhou

Si-Min He: 7 papers in the catalog · China, Shanghai, Hangzhou · Chinese Academy of Sciences, Chinese Academy of Sciences · Works on De novo SAV discovery, Open-pNovo, pNovo

Affiliations

Chinese Academy of Sciences
Chinese Academy of Sciences · Key Laboratory of Intelligent Information Processing of Chinese Academy of Sciences, Institute of Computing Technology
Institute of Computing Technology
University of Chinese Academy of Sciences

Elsewhere

ORCID 0000-0002-2434-7194 · OpenAlex

Papers

pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework (2019, Bioinformatics)
Precision De Novo Peptide Sequencing Using Mirror Proteases of Ac-LysargiNase and Trypsin for Large-scale Proteomics (2019, Molecular & Cellular Proteomics)
pSite: Amino Acid Confidence Evaluation for Quality Control of De Novo Peptide Sequencing and Modification Site Localization (2017, Journal of Proteome Research)
Open-pNovo: De Novo Peptide Sequencing with Thousands of Protein Modifications (2017, Journal of Proteome Research)
De novo identification and quantification of single amino-acid variants in human brain (2014, Journal of Molecular Cell Biology)
pNovo+: De Novo Peptide Sequencing Using Complementary HCD and ETD Tandem Mass Spectra (2013, Journal of Proteome Research)
pNovo: De novo Peptide Sequencing and Identification Using HCD Spectra (2010, Journal of Proteome Research)

Methods and tools

De novo SAV discovery, Open-pNovo, pNovo, pNovo 3, pNovo+, pNovoM, pSite

Co-authors (41)

Ranked by Newman fractional collaboration strength, so a pair on a two-author paper counts for more than a pair on a 50-author consortium paper.

Hao Chi strength 0.88, 7 shared
Wen-Feng Zeng strength 0.68, 5 shared
Hao Yang strength 0.58, 4 shared
Wen-Jing Zhou strength 0.50, 3 shared
Chao Liu strength 0.35, 3 shared
Rui-Xiang Sun strength 0.34, 3 shared
Kun He strength 0.24, 2 shared
Bing Yang strength 0.20, 2 shared
Chun-Qing Song strength 0.20, 2 shared
Meng-Qiu Dong strength 0.20, 2 shared
Rui-Min Wang strength 0.11, 1 shared
Xiu-Nan Niu strength 0.11, 1 shared
Zhao-Wei Wang strength 0.11, 1 shared
Zhen-Lin Chen strength 0.11, 1 shared
Haifeng Chen strength 0.10, 1 shared
Haipeng Wang strength 0.10, 1 shared
Jia-Rui Wu strength 0.10, 1 shared
Jianyun Liu strength 0.10, 1 shared
Le-Heng Wang strength 0.10, 1 shared
Long Wu strength 0.10, 1 shared
Ning Fu strength 0.10, 1 shared
Philipp Khaitovich strength 0.10, 1 shared
Qing-Run Li strength 0.10, 1 shared
Quan-Hu Sheng strength 0.10, 1 shared
Rong Zeng strength 0.10, 1 shared
Xi Jiang strength 0.10, 1 shared
Yan Fu strength 0.10, 1 shared
Zheng Yan strength 0.10, 1 shared
Zhi-Duan Su strength 0.10, 1 shared
Zuo-Fei Yuan strength 0.10, 1 shared
Christopher M. Overall strength 0.07, 1 shared
Fei-Lin Wu strength 0.07, 1 shared
Feng Xu strength 0.07, 1 shared
Fu-Qiang Wang strength 0.07, 1 shared
Jun-Ling Zhang strength 0.07, 1 shared
Ming-Zhi Zhao strength 0.07, 1 shared
Ping Xu strength 0.07, 1 shared
Wei-Di Xiao strength 0.07, 1 shared
Xi Wang strength 0.07, 1 shared
Yanchang Li strength 0.07, 1 shared

Seen in the charts

Back to the full map