Biomedical Informatics Research Center Antwerp

Antwerp, Belgium · 1 author

Biomedical Informatics Research Center Antwerp (Antwerp, Belgium): 1 author and 13 papers in the de novo peptide sequencing catalog.

Authors (1)

Wout Bittremieux

Papers (13)

AI proteomics: from protein identification to virtual cells (2026, Nature Methods)
CasanovoGUI: a cross-platform desktop application for deep learning-based de novo peptide sequencing with Casanovo (2026, bioRxiv)
A living proteomics benchmark for comprehensive evaluation of deep learning-based de novo peptide sequencing tools (2026, Nature Methods (Registered Report))
Improvements to Casanovo, a Deep Learning De Novo Peptide Sequencer (2025, Journal of Proteome Research)
Improvements to CasaNovo, a deep learning de novo peptide sequencer (2025, bioRxiv)
Foundation model for mass spectrometry proteomics (2025, arXiv)
Deep Learning Methods for De Novo Peptide Sequencing (2024, Mass Spectrometry Reviews)
Accounting for Digestion Enzyme Bias in Casanovo (2024, Journal of Proteome Research)
Sequence-to-sequence translation from mass spectra to peptides with a transformer model (2024, Nature Communications)
Sequence-to-sequence translation from mass spectra to peptides with a transformer model (2023, bioRxiv)
De novo mass spectrometry peptide sequencing with a transformer model (2022, ICML 2022)
De novo mass spectrometry peptide sequencing with a transformer model (2022, bioRxiv)
2018 YPIC Challenge: A Case Study in Characterizing an Unknown Protein Sample (2019, Journal of Proteome Research)

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