University of Antwerp
Antwerp, Belgium · 6 authors
University of Antwerp (Antwerp, Belgium): 6 authors and 19 papers in the de novo peptide sequencing catalog.
Departments
- Adrem Data Lab
- Department of Computer Science
Papers (19)
- AI proteomics: from protein identification to virtual cells (2026, Nature Methods)
- CasanovoGUI: a cross-platform desktop application for deep learning-based de novo peptide sequencing with Casanovo (2026, bioRxiv)
- A living proteomics benchmark for comprehensive evaluation of deep learning-based de novo peptide sequencing tools (2026, Nature Methods (Registered Report))
- Improvements to Casanovo, a Deep Learning De Novo Peptide Sequencer (2025, Journal of Proteome Research)
- Improvements to CasaNovo, a deep learning de novo peptide sequencer (2025, bioRxiv)
- Foundation model for mass spectrometry proteomics (2025, arXiv)
- Deep Learning Methods for De Novo Peptide Sequencing (2024, Mass Spectrometry Reviews)
- Accounting for Digestion Enzyme Bias in Casanovo (2024, Journal of Proteome Research)
- Sequence-to-sequence translation from mass spectra to peptides with a transformer model (2024, Nature Communications)
- NovoLign: metaproteomics by sequence alignment (2024, bioRxiv)
- NovoLign: metaproteomics by sequence alignment (2024, ISME Communications)
- Sequence-to-sequence translation from mass spectra to peptides with a transformer model (2023, bioRxiv)
- De novo mass spectrometry peptide sequencing with a transformer model (2022, ICML 2022)
- De novo mass spectrometry peptide sequencing with a transformer model (2022, bioRxiv)
- Database-independent de novo metaproteomics of complex microbial communities (2021, Cell Systems)
- Quantitative profiling of microbial communities by de novo metaproteomics (2020, bioRxiv)
- 2018 YPIC Challenge: A Case Study in Characterizing an Unknown Protein Sample (2019, Journal of Proteome Research)
- Screening Method for the Discovery of Potential Bioactive Cysteine-Containing Peptides Using 3D Mass Mapping (2015, Journal of the American Society for Mass Spectrometry)
- De novo sequencing of two novel peptides homologous to calcitonin-like peptides, from skin secretion of the Chinese Frog, Odorrana schmackeri (2015, EuPA Open Proteomics)