VIB
Ghent, Belgium · 10 authors
VIB (Ghent, Belgium): 10 authors and 9 papers in the de novo peptide sequencing catalog.
Departments
- CompOmics, VIB Center for Medical Biotechnology
- Department of Medical Protein Research
- VIB-UGent Center for Medical Biotechnology
Papers (9)
- InstaNovo-P: a de novo peptide sequencing model for phosphoproteomics (2026, Nature Communications)
- A living proteomics benchmark for comprehensive evaluation of deep learning-based de novo peptide sequencing tools (2026, Nature Methods (Registered Report))
- Limitations of de novo sequencing in resolving sequence ambiguity (2025, bioRxiv)
- InstaNovo-P: A de novo peptide sequencing model for phosphoproteomics (2025, bioRxiv)
- Metaproteomics Beyond Databases: Addressing the Challenges and Potentials of De Novo Sequencing (2025, Proteomics)
- MS2Rescore: Data-Driven Rescoring Dramatically Boosts Immunopeptide Identification Rates (2022, Molecular & Cellular Proteomics)
- PeptideShaker enables reanalysis of MS-derived proteomics data sets (2015, Nature Biotechnology)
- DeNovoGUI: An Open Source Graphical User Interface for de Novo Sequencing of Tandem Mass Spectra (2014, Journal of Proteome Research)
- MS2PIP: a tool for MS/MS peak intensity prediction (2013, Bioinformatics)