Tim Van Den Bossche

3 papers in the catalog · Belgium

Tim Van Den Bossche: 3 papers in the catalog · Belgium · Ghent University, VIB · Works on De novo sequence-ambiguity benchmark, Living proteomics benchmark, Metaproteomics de novo review

Affiliations

• Ghent University · Department of Biomolecular Medicine, Faculty of Medicine and Health Sciences
• VIB · CompOmics, VIB Center for Medical Biotechnology
• VIB · VIB-UGent Center for Medical Biotechnology

Elsewhere

ORCID 0000-0002-5916-2587

Papers

• A living proteomics benchmark for comprehensive evaluation of deep learning-based de novo peptide sequencing tools (2026, Nature Methods (Registered Report))
• Limitations of de novo sequencing in resolving sequence ambiguity (2025, bioRxiv)
• Metaproteomics Beyond Databases: Addressing the Challenges and Potentials of De Novo Sequencing (2025, Proteomics)

Methods and tools

De novo sequence-ambiguity benchmark, Living proteomics benchmark, Metaproteomics de novo review

Co-authors (61)

Ranked by Newman fractional collaboration strength, so a pair on a two-author paper counts for more than a pair on a 50-author consortium paper.

• Denis Beslic strength 0.25, 2 shared
• Laura L. Elo strength 0.25, 2 shared
• Lennart Martens strength 0.25, 2 shared
• Sam van Puyenbroeck strength 0.25, 2 shared
• Tanja Holstein strength 0.25, 2 shared
• Thilo Muth strength 0.25, 2 shared
• Tomi Suomi strength 0.25, 2 shared
• Robbin Bouwmeester strength 0.11, 1 shared
• Tine Claeys strength 0.11, 1 shared
• Alfred Nilsson strength 0.02, 1 shared
• Baozhen Shan strength 0.02, 1 shared
• Benjamin A. Neely strength 0.02, 1 shared
• Bin Ma strength 0.02, 1 shared
• Ceder Dens strength 0.02, 1 shared
• Charlotte Adams strength 0.02, 1 shared
• Cheng Chang strength 0.02, 1 shared
• Cheng Ge strength 0.02, 1 shared
• Chenyu Yao strength 0.02, 1 shared
• Christian Nix strength 0.02, 1 shared
• Daniela Klaproth-Andrade strength 0.02, 1 shared
• Di Zhang strength 0.02, 1 shared
• Ekapol Chuangsuwanich strength 0.02, 1 shared
• Guillaume Deflandre strength 0.02, 1 shared
• Haipeng Wang strength 0.02, 1 shared
• Haixu Tang strength 0.02, 1 shared
• Jeroen Van Goey strength 0.02, 1 shared
• Jingbo Zhou strength 0.02, 1 shared
• Joel Lapin strength 0.02, 1 shared
• Julien Gagneur strength 0.02, 1 shared
• Jun Xia strength 0.02, 1 shared
• Kaiyuan Liu strength 0.02, 1 shared
• Konstantinos Kalogeropoulos strength 0.02, 1 shared
• Laurent Gatto strength 0.02, 1 shared
• Lei Xin strength 0.02, 1 shared
• Lukas Käll strength 0.02, 1 shared
• Marina Pominova strength 0.02, 1 shared
• Mathias Wilhelm strength 0.02, 1 shared
• Melih Yilmaz strength 0.02, 1 shared
• Michael R. Shortreed strength 0.02, 1 shared
• Ming Li strength 0.02, 1 shared

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