PeptideShaker enables reanalysis of MS-derived proteomics data sets
peer-reviewed · Nature Biotechnology · 2015
peer-reviewed · Nature Biotechnology · 2015. Marc Vaudel et al.
| Date | 2015-01-09 |
| Type | peer-reviewed |
| Venue | Nature Biotechnology |
| Publisher | Springer Science and Business Media LLC |
| Contribution | adjacent |
| DOI | 10.1038/nbt.3109 |
| Citations (OpenAlex) | 571 |
| Venue 2-year citedness | 11.97 |
Methods and tools
- PeptideShaker: Open-source Java GUI that aggregates and inspects search-engine and de-novo-engine results: the third sibling alongside DeNovoGUI and SearchGUI from the CompOmics-aligned Bergen / Ghent group.
Cited by (5)
- Metaproteomics Beyond Databases: Addressing the Challenges and Potentials of De Novo Sequencing (2025) crossref
- Comprehensive evaluation of peptide de novo sequencing tools for monoclonal antibody assembly (2023) both
- A potential golden age to come—current tools, recent use cases, and future avenues for de novo sequencing in proteomics (2018) crossref
- SearchGUI: A Highly Adaptable Common Interface for Proteomics Search and de Novo Engines (2018) crossref
- Evaluating de novo sequencing in proteomics: already an accurate alternative to database-driven peptide identification? (2017) crossref