Lennart Martens

8 papers in the catalog · Belgium, France

Lennart Martens: 8 papers in the catalog · Belgium, France · Ghent University, Ghent University · Works on De novo sequence-ambiguity benchmark, DeNovoGUI, InstaNovo-P

Affiliations

Ghent University · Department of Biochemistry
Ghent University · Department of Biomolecular Medicine, Faculty of Medicine and Health Sciences
Infrastructure Nationale de Protéomique (ProFI-FR2048)
University of Strasbourg · BioOrganic Mass Spectrometry Laboratory (LSMBO), IPHC UMR 7178, CNRS
VIB · CompOmics, VIB Center for Medical Biotechnology
VIB · Department of Medical Protein Research

Elsewhere

ORCID 0000-0003-4277-658X · OpenAlex

Papers

InstaNovo-P: a de novo peptide sequencing model for phosphoproteomics (2026, Nature Communications)
Limitations of de novo sequencing in resolving sequence ambiguity (2025, bioRxiv)
InstaNovo-P: A de novo peptide sequencing model for phosphoproteomics (2025, bioRxiv)
Metaproteomics Beyond Databases: Addressing the Challenges and Potentials of De Novo Sequencing (2025, Proteomics)
MS2Rescore: Data-Driven Rescoring Dramatically Boosts Immunopeptide Identification Rates (2022, Molecular & Cellular Proteomics)
PeptideShaker enables reanalysis of MS-derived proteomics data sets (2015, Nature Biotechnology)
DeNovoGUI: An Open Source Graphical User Interface for de Novo Sequencing of Tandem Mass Spectra (2014, Journal of Proteome Research)
MS2PIP: a tool for MS/MS peak intensity prediction (2013, Bioinformatics)

Methods and tools

De novo sequence-ambiguity benchmark, DeNovoGUI, InstaNovo-P, MS2PIP, MS2Rescore, Metaproteomics de novo review, PeptideShaker

Co-authors (40)

Ranked by Newman fractional collaboration strength, so a pair on a two-author paper counts for more than a pair on a 50-author consortium paper.

Sven Degroeve strength 1.17, 2 shared
Thilo Muth strength 0.42, 3 shared
Sam van Puyenbroeck strength 0.37, 4 shared
Harald Barsnes strength 0.31, 2 shared
Marc Vaudel strength 0.31, 2 shared
Robbin Bouwmeester strength 0.28, 2 shared
Denis Beslic strength 0.25, 2 shared
Laura L. Elo strength 0.25, 2 shared
Tanja Holstein strength 0.25, 2 shared
Tim Van Den Bossche strength 0.25, 2 shared
Tomi Suomi strength 0.25, 2 shared
Tine Claeys strength 0.22, 3 shared
Arthur Declercq strength 0.17, 1 shared
Aurélie Hirschler strength 0.17, 1 shared
Christian G. Huber strength 0.17, 1 shared
Christine Carapito strength 0.17, 1 shared
Erdmann Rapp strength 0.17, 1 shared
Lisa Weilnbock strength 0.17, 1 shared
Ralf Gabriels strength 0.17, 1 shared
Albert Sickmann strength 0.14, 1 shared
Eystein Oveland strength 0.14, 1 shared
Frode S Berven strength 0.14, 1 shared
Julia M Burkhart strength 0.14, 1 shared
René P. Zahedi strength 0.14, 1 shared
Amandla Mabona strength 0.11, 2 shared
Annekatrine Kirketerp-Møller strength 0.11, 2 shared
Chiara Francavilla strength 0.11, 2 shared
Erwin M. Schoof strength 0.11, 2 shared
Ida Sofie Goldschmidt strength 0.11, 2 shared
Jennifer Ferguson strength 0.11, 2 shared
Jeroen Van Goey strength 0.11, 2 shared
Jesper Lauridsen strength 0.11, 2 shared
Kevin Eloff strength 0.11, 2 shared
Konstantinos Kalogeropoulos strength 0.11, 2 shared
Nicolas Lopez Carranza strength 0.11, 2 shared
Pathmanaban Ramasamy strength 0.11, 2 shared
Paul Fullwood strength 0.11, 2 shared
Rachel Catzel strength 0.11, 2 shared
Timothy P. Jenkins strength 0.11, 2 shared
Vahap Canbay strength 0.11, 2 shared

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