Searching Sequence Databases via De Novo Peptide Sequencing by Tandem Mass Spectrometry
peer-reviewed · Molecular Biotechnology · 2002
peer-reviewed · Molecular Biotechnology · 2002. Richard S. Johnson et al.
| Date | 2002-12-01 |
| Type | peer-reviewed |
| Venue | Molecular Biotechnology |
| Publisher | Springer Science and Business Media LLC |
| Contribution | algorithm |
| DOI | 10.1385/MB:22:3:301 |
| Citations (OpenAlex) | 97 |
| Venue 2-year citedness | 3.52 |
Methods and tools
- Lutefisk: First widely-used heuristic de novo tool
Cited by (11)
- Learning Fragmentation Physics or Exploiting Sequence Priors? Benchmarking Bias in Deep Learning Models for De Novo Peptide Sequencing (2026) both
- PepGo: a deep learning and tree search-based model for de novo peptide sequencing (2025) crossref
- Denovo-GCN: De Novo Peptide Sequencing by Graph Convolutional Neural Networks (2023) both
- Metaproteomic Characterization of Forensic Samples (2022) crossref
- De novo sequencing of proteins by mass spectrometry (2020) both
- Uncovering Thousands of New Peptides with Sequence-Mask-Search Hybrid De Novo Peptide Sequencing Framework (2019) both
- Mass spectrometry-based protein identification by integrating de novo sequencing with database searching (2013) both
- Algorithms for the de novo sequencing of peptides from tandem mass spectra (2011) crossref
- Assessing peptide de novo sequencing algorithms performance on large and diverse data sets (2007) crossref
- DeNovoID: a web-based tool for identifying peptides from sequence and mass tags deduced from de novo peptide sequencing by mass spectroscopy (2005) semanticscholar
- Shotgun Protein Sequencing by Tandem Mass Spectra Assembly (2004) crossref