Casanovo-DB

adjacent · Transformer (AR)

Casanovo-DB: adjacent · Transformer (AR). Database search scoring

Database search scoring

Kind	adjacent
Deep learning	yes
Acquisition	DDA
Family	Transformer (AR)

Data

What the papers describing this method trained it on and reported its results on, as each paper states it. A version is named only where the paper names one.

Also used, purpose not recorded

• A comprehensive LFQ benchmark dataset to validate data analysis pipelines on modern day acquisition strategies in proteo (as deposited)

Paper describing it

• A learned score function improves the power of mass spectrometry database search (2024, bioRxiv, preprint)

Authors (5)

Varun Ananth, Justin Sanders, Melih Yilmaz, Sewoong Oh, William Stafford Noble

Seen in the charts

• The architectures
• Models and the authors behind them

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