Justin Sanders

8 papers in the catalog · USA

Justin Sanders: 8 papers in the catalog · USA · University of Washington · Works on Casanovo, Casanovo Foundation, Casanovo-DB

Affiliations

• University of Washington · Paul G. Allen School of Computer Science and Engineering

Elsewhere

ORCID 0000-0001-8928-4051

Papers

• Improvements to Casanovo, a Deep Learning De Novo Peptide Sequencer (2025, Journal of Proteome Research)
• Improvements to CasaNovo, a deep learning de novo peptide sequencer (2025, bioRxiv)
• A transformer model for de novo sequencing of data independent acquisition mass spectrometry data (2025, Nature Methods)
• Foundation model for mass spectrometry proteomics (2025, arXiv)
• Deep Learning Methods for De Novo Peptide Sequencing (2024, Mass Spectrometry Reviews)
• Accounting for Digestion Enzyme Bias in Casanovo (2024, Journal of Proteome Research)
• A transformer model for de novo sequencing of data independent acquisition mass spectrometry data (2024, bioRxiv)
• A learned score function improves the power of mass spectrometry database search (2024, bioRxiv)

Methods and tools

Casanovo, Casanovo Foundation, Casanovo-DB, Cascadia, Deep Learning Methods for De Novo Peptide Sequencing

Co-authors (20)

Ranked by Newman fractional collaboration strength, so a pair on a two-author paper counts for more than a pair on a 50-author consortium paper.

• William Stafford Noble strength 1.10, 8 shared
• Sewoong Oh strength 0.98, 7 shared
• Melih Yilmaz strength 0.83, 6 shared
• William E. Fondrie strength 0.58, 5 shared
• Wout Bittremieux strength 0.58, 5 shared
• Bo Wen strength 0.54, 5 shared
• Varun Ananth strength 0.52, 4 shared
• Michael J. MacCoss strength 0.42, 4 shared
• Carlo F. Melendez strength 0.29, 2 shared
• Michael Riffle strength 0.27, 3 shared
• Christine C. Wu strength 0.27, 2 shared
• Paul Rudnick strength 0.27, 2 shared
• Rich Johnson strength 0.27, 2 shared
• Marina Pominova strength 0.20, 2 shared
• Chris Hsu strength 0.15, 2 shared
• Daniela Klaproth-Andrade strength 0.15, 2 shared
• Gwenneth Straub strength 0.15, 2 shared
• Lingwen Xu strength 0.15, 2 shared
• Jacob H. Russell strength 0.14, 1 shared
• Nicholas M. Riley strength 0.14, 1 shared

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