Varun Ananth

6 papers in the catalog · USA

Varun Ananth: 6 papers in the catalog · USA · University of Washington · Works on Casanovo, Casanovo-DB, Deep Learning Methods for De Novo Peptide Sequencing

Affiliations

• University of Washington · Paul G. Allen School of Computer Science and Engineering

Elsewhere

OpenAlex

Papers

• Improvements to Casanovo, a Deep Learning De Novo Peptide Sequencer (2025, Journal of Proteome Research)
• Improvements to CasaNovo, a deep learning de novo peptide sequencer (2025, bioRxiv)
• Deep Learning Methods for De Novo Peptide Sequencing (2024, Mass Spectrometry Reviews)
• Sequence-to-sequence translation from mass spectra to peptides with a transformer model (2024, Nature Communications)
• A learned score function improves the power of mass spectrometry database search (2024, bioRxiv)
• Sequence-to-sequence translation from mass spectra to peptides with a transformer model (2023, bioRxiv)

Methods and tools

Casanovo, Casanovo-DB, Deep Learning Methods for De Novo Peptide Sequencing

Co-authors (16)

Ranked by Newman fractional collaboration strength, so a pair on a two-author paper counts for more than a pair on a 50-author consortium paper.

• Melih Yilmaz strength 0.81, 6 shared
• William Stafford Noble strength 0.81, 6 shared
• Sewoong Oh strength 0.68, 5 shared
• William E. Fondrie strength 0.56, 5 shared
• Wout Bittremieux strength 0.56, 5 shared
• Justin Sanders strength 0.52, 4 shared
• Carlo F. Melendez strength 0.41, 3 shared
• Rowan Nelson strength 0.29, 2 shared
• Bo Wen strength 0.27, 3 shared
• Marina Pominova strength 0.20, 2 shared
• Chris Hsu strength 0.15, 2 shared
• Daniela Klaproth-Andrade strength 0.15, 2 shared
• Gwenneth Straub strength 0.15, 2 shared
• Lingwen Xu strength 0.15, 2 shared
• Michael J. MacCoss strength 0.15, 2 shared
• Michael Riffle strength 0.15, 2 shared

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