De novo sequencing of DIA data
benchmark · DIA · 1 version · 11 papers
De novo sequencing of DIA data
| Kind | benchmark |
| Acquisition | DIA |
De novo sequencing of DIA data
Versions
as deposited
introduced by Deep learning enables de novo peptide sequencing from data-independent-acquisition mass spectrometry
Where it lives:
- MassIVE · MSV000082368
Deposited by (1)
- Deep learning enables de novo peptide sequencing from data-independent-acquisition mass spectrometry (2018) peer-reviewed as deposited
Trained on by (3)
- DiffNovo: A Transformer-Diffusion Model for De Novo Peptide Sequencing (2025) peer-reviewed as deposited
- Transformer-Based De Novo Peptide Sequencing for Data-Independent Acquisition Mass Spectrometry (2024) postprint as deposited
- Transformer-Based De Novo Peptide Sequencing for Data-Independent Acquisition Mass Spectrometry (2023) peer-reviewed as deposited
Evaluated on by (11)
- DiffNovo: A Transformer-Diffusion Model for De Novo Peptide Sequencing (2025) peer-reviewed as deposited
- A transformer model for de novo sequencing of data independent acquisition mass spectrometry data (2025) peer-reviewed as deposited
- BiATNovo: An Attention-based Bidirectional De Novo Sequencing Framework for Data-Independent-Acquisition Mass Spectrometry (2024) preprint version not stated
- A transformer model for de novo sequencing of data independent acquisition mass spectrometry data (2024) preprint as deposited
- Transformer-Based De Novo Peptide Sequencing for Data-Independent Acquisition Mass Spectrometry (2024) postprint as deposited
- Transformer-Based De Novo Peptide Sequencing for Data-Independent Acquisition Mass Spectrometry (2023) peer-reviewed as deposited
- Accurate de novo peptide sequencing using fully convolutional neural networks (2023) peer-reviewed as deposited
- BiATNovo: A Self-Attention based Bidirectional Peptide Sequencing Method (2023) preprint version not stated
- Deep Active Learning for De Novo Peptide Sequencing from Data-independent-acquisition Mass Spectrometry (2022) ML conference as deposited
- PepNet: A Fully Convolutional Neural Network for De novo Peptide Sequencing (2022) preprint as deposited
- Deep learning enables de novo peptide sequencing from data-independent-acquisition mass spectrometry (2018) peer-reviewed as deposited
Methods on these papers (7)
- AL-DeepNovo-DIA algorithm
- BiATNovo algorithm
- Cascadia algorithm
- DeepNovo-DIA algorithm
- DiaTrans algorithm
- DiffNovo algorithm
- PepNet algorithm
Taken from the describing links only, so a paper that merely ran a tool on this data does not make that tool a method of it.