DeepNovo-DIA

algorithm · CNN + RNN

DeepNovo-DIA: algorithm · CNN + RNN. First de novo for DIA

First de novo for DIA

Kind	algorithm
Deep learning	yes
Acquisition	DIA
Family	CNN + RNN

Code

• https://github.com/nh2tran/DeepNovo-DIA

Live stars, open issues and last-push figures are on the Code activity chart.

Checkpoints

Version	Trained on	Host	Licence	Size	Checked	Backup
train.urine_pain.ioncnn.lstm	—	Google Drive	Non-commercial use (custom)	184 MB	verified 2026-10-02	copy

A host marked archival has a DOI and keeps what it is given. The others can move or disappear, which is why they are checked rather than merely listed. verified means the bytes were fetched and hashed on the date shown; live means only that the host answered when last asked. Where a copy is linked, it is a backup of someone else’s weights kept in case the original link goes stale; the original is the link to cite and to prefer.

Paper describing it

• Deep learning enables de novo peptide sequencing from data-independent-acquisition mass spectrometry (2018, Nature Methods, peer-reviewed)

Authors (9)

Ngoc Hieu Tran, Rui Qiao, Lei Xin, Xin Chen (Waterloo), Chuyi Liu, Xianglilan Zhang, Baozhen Shan, Ali Ghodsi, Ming Li

Seen in the charts

• The architectures
• Code activity
• Models and the authors behind them

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