Hierarchical subsequence de novo scoring (PNNL)
algorithm · Graph / DP
Hierarchical subsequence de novo scoring (PNNL): algorithm · Graph / DP. PNNL de novo approach that finds sequences and subsequences hierarchically in a reduced spectrum graph, using multiple ion series and natural isotope peaks, and ranks…
PNNL de novo approach that finds sequences and subsequences hierarchically in a reduced spectrum graph, using multiple ion series and natural isotope peaks, and ranks candidates by the probability of random matches.
| Kind | algorithm |
| Deep learning | no |
| Acquisition | DDA |
| Family | Graph / DP |
Papers describing it (2)
- Improved peptide sequencing using isotope information inherent in tandem mass spectra (2003, Rapid Communications in Mass Spectrometry, peer-reviewed)
- A model of random sequences for de novo peptide sequencing (2003, Third IEEE Symposium on Bioinformatics and Bioengineering, 2003. Proceedings, peer-reviewed)