Manual MS/MS de novo interpretation
adjacent · Manual interpretation
Manual MS/MS de novo interpretation: adjacent · Manual interpretation. Protocol for manual de novo peptide sequencing from MS/MS spectra.
Protocol for manual de novo peptide sequencing from MS/MS spectra.
| Kind | adjacent |
| Deep learning | no |
| Acquisition | DDA |
| Family | Manual interpretation |
Paper describing it
- De Novo Peptide Sequencing via Manual Interpretation of MS/MS Spectra (2002, Current Protocols in Protein Science, peer-reviewed)
Papers using it (17)
Applications and evaluations that ran this method. They are not counted among its authors below.
- Quantification of snake venom proteomes by mass spectrometry - considerations and perspectives (2023, Mass Spectrometry Reviews, peer-reviewed)
- Identification of The Canidae Iron Regulatory Hormone Hepcidin (2019, Scientific Reports, peer-reviewed)
- Characterization of the First Conotoxin from Conus ateralbus, a Vermivorous Cone Snail from the Cabo Verde Archipelago (2019, Marine Drugs, peer-reviewed)
- Identification of single amino acid substitutions (SAAS) in neuraminidase from influenza a virus (H1N1) via mass spectrometry analysis coupled with de novo peptide sequencing (2016, Rapid Communications in Mass Spectrometry, peer-reviewed)
- De novo sequencing of two novel peptides homologous to calcitonin-like peptides, from skin secretion of the Chinese Frog, Odorrana schmackeri (2015, EuPA Open Proteomics, peer-reviewed)
- Cinerascetins, New Peptides fromHypsiboas cinerascens: MALDI LIFT-TOF-MS/MSde novoSequence and Imaging Analysis (2015, Journal of the Brazilian Chemical Society, peer-reviewed)
- A combined de novo protein sequencing and cDNA library approach to the venomic analysis of Chinese spider Araneus ventricosus (2013, Journal of Proteomics, peer-reviewed)
- Partial De Novo Sequencing and Unusual CID Fragmentation of a 7 kDa, Disulfide-Bridged Toxin (2012, Journal of the American Society for Mass Spectrometry, peer-reviewed)
- Isolation and sequence analysis of peptides from the skin secretion of the Middle East tree frog Hyla savignyi (2010, Analytical and Bioanalytical Chemistry, peer-reviewed)
- Characterization of a peptide family from the skin secretion of the Middle East Tree Frog Hyla savignyi by composition‐based de novo sequencing (2010, Rapid Communications in Mass Spectrometry, peer-reviewed)
- Incorporating Biological Mass Spectrometry into Undergraduate Teaching Labs, Part 3: De Novo Peptide Sequencing Using Electrospray Tandem Mass Spectrometry (2009, Journal of Chemical Education, peer-reviewed)
- De Novo Sequencing of RCB-1 to -3: Peptide Biomarkers from the Castor Bean PlantRicinus communis (2009, Analytical Chemistry, peer-reviewed)
- De novo sequencing of peptides secreted by the skin glands of the Caucasian Green Frog Rana ridibunda (2008, Rapid Communications in Mass Spectrometry, peer-reviewed)
- Rapid and Reliable Peptide de Novo Sequencing Facilitated by Microfluidic Chip-Based Edman Degradation (2008, Journal of Proteome Research, peer-reviewed)
- Mapping the proteome of thylakoid membranes by de novo sequencing of intermembrane peptide domains (2006, PROTEOMICS, peer-reviewed)
- De Novo Sequencing by Nano-Electrospray Multiple-Stage Tandem Mass Spectrometry of An Immune-Induced Peptide of Drosophila Melanogaster (2001, European Journal of Mass Spectrometry, peer-reviewed)
- A Proteomics Approach to the Identification of Mammalian Mitochondrial Small Subunit Ribosomal Proteins (2000, Journal of Biological Chemistry, peer-reviewed)