MS BLAST
adjacent · Homology search
MS BLAST: adjacent · Homology search. Homology search of error-tolerant de novo sequences against a protein database, introduced for charting the proteomes of organisms with unsequenced genomes and later…
Homology search of error-tolerant de novo sequences against a protein database, introduced for charting the proteomes of organisms with unsequenced genomes and later used to validate borderline identifications.
| Kind | adjacent |
| Deep learning | no |
| Acquisition | DDA |
| Also known as | MS BLAST |
| Family | Homology search |
Papers describing it (3)
- Charting the Proteomes of Organisms with Unsequenced Genomes by MALDI-Quadrupole Time-of-Flight Mass Spectrometry and BLAST Homology Searching (2001, Analytical Chemistry, peer-reviewed)
- The Power and the Limitations of Cross-Species Protein Identification by Mass Spectrometry-driven Sequence Similarity Searches (2004, Molecular & Cellular Proteomics, peer-reviewed)
- Rapid Validation of Protein Identifications with the Borderline Statistical Confidence via De Novo Sequencing and MS BLAST Searches (2006, Journal of Proteome Research, peer-reviewed)
Papers using it (5)
Applications and evaluations that ran this method. They are not counted among its authors below.
- Un ensemble d’outils protéomiques pour la caractérisation de protéines d’organismes très divers : plantes, champignons et parasites (2026, thesis)
- Mass spectrometry-assisted venom profiling of Hypnale hypnale found in the Western Ghats of India incorporating de novo sequencing approaches (2018, International Journal of Biological Macromolecules, peer-reviewed)
- Homology‐Driven Proteomics of Dinoflagellates with Unsequenced Genomes Using MALDI‐TOF/TOF and Automated De Novo Sequencing (2011, Evidence-Based Complementary and Alternative Medicine, peer-reviewed)
- Proteomic characterization of lignocellulose-degrading enzymes secreted by Phanerochaete carnosa grown on spruce and microcrystalline cellulose (2010, Applied Microbiology and Biotechnology, peer-reviewed)
- A workflow to increase the detection rate of proteins from unsequenced organisms in high‐throughput proteomics experiments (2007, PROTEOMICS, peer-reviewed)