Ari Frank

9 papers in the catalog · Israel, Germany, USA, La Jolla

Ari Frank: 9 papers in the catalog · Israel, Germany, USA, La Jolla · Affectivon, Inc., Max Planck Institute of Molecular Cell Biology and Genetics · Works on InsPecT, Layered sequence-similarity proteomics, MS BLAST

Affiliations

Affectivon, Inc.
Max Planck Institute of Molecular Cell Biology and Genetics
University of California San Diego
University of California San Diego · Department of Bioengineering and Computer Science Department
University of California San Diego · Department of Computer Science and Engineering

Elsewhere

OpenAlex

Papers

Sequencing-Grade De novo Analysis of MS/MS Triplets (CID/HCD/ETD) From Overlapping Peptides (2013, Journal of Proteome Research)
A Ranking-Based Scoring Function for Peptide-Spectrum Matches (2009, Journal of Proteome Research)
Sequence similarity‐driven proteomics in organisms with unknown genomes by LC‐MS/MS and automated de novo sequencing (2007, PROTEOMICS)
Protein identification by spectral networks analysis (2007, Proceedings of the National Academy of Sciences)
De Novo Peptide Sequencing and Identification with Precision Mass Spectrometry (2007, Journal of Proteome Research)
Rapid Validation of Protein Identifications with the Borderline Statistical Confidence via De Novo Sequencing and MS BLAST Searches (2006, Journal of Proteome Research)
Peptide Sequence Tags for Fast Database Search in Mass-Spectrometry (2005, Journal of Proteome Research)
InsPecT: Identification of Posttranslationally Modified Peptides from Tandem Mass Spectra (2005, Analytical Chemistry)
PepNovo: de novo peptide sequencing via probabilistic network modeling (2005, Analytical Chemistry)

Methods and tools

InsPecT, Layered sequence-similarity proteomics, MS BLAST, MS/MS Triplets, PepNovo, Sequence-tag filtration for database search, Shotgun Protein Sequencing

Co-authors (20)

Ranked by Newman fractional collaboration strength, so a pair on a two-author paper counts for more than a pair on a 50-author consortium paper.

Pavel A. Pevzner strength 2.39, 7 shared
Nuno Bandeira strength 0.67, 2 shared
Stephen Tanner strength 0.48, 2 shared
Vineet Bafna strength 0.48, 2 shared
Adrian Guthals strength 0.33, 1 shared
Andrej Shevchenko strength 0.33, 2 shared
Dekel Tsur strength 0.33, 1 shared
Henrik Thomas strength 0.33, 2 shared
Karl R. Clauser strength 0.33, 1 shared
Patrice Waridel strength 0.33, 2 shared
Vineeth Surendranath strength 0.33, 2 shared
Michael L. Nielsen strength 0.25, 1 shared
Mikhail M. Savitski strength 0.25, 1 shared
Roman A. Zubarev strength 0.25, 1 shared
Natalie Wielsch strength 0.17, 1 shared
Shamil Sunyaev strength 0.17, 1 shared
Ebrahim Zandi strength 0.14, 1 shared
Hongjun Shu strength 0.14, 1 shared
Ling-Chi Wang strength 0.14, 1 shared
Marc Mumby strength 0.14, 1 shared

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