PepNovo
algorithm · Graph / DP
PepNovo: algorithm · Graph / DP. Probabilistic network + DP
Probabilistic network + DP
| Kind | algorithm |
| Deep learning | no |
| Acquisition | DDA |
| Family | Graph / DP |
Papers describing it (3)
- PepNovo: de novo peptide sequencing via probabilistic network modeling (2005, Analytical Chemistry, peer-reviewed)
- De Novo Peptide Sequencing and Identification with Precision Mass Spectrometry (2007, Journal of Proteome Research, peer-reviewed)
- A Ranking-Based Scoring Function for Peptide-Spectrum Matches (2009, Journal of Proteome Research, peer-reviewed)
Papers using it (6)
Applications and evaluations that ran this method. They are not counted among its authors below.
- PeposX-Exhaust: A lightweight and efficient tool for identification of short peptides (2024, Food Chemistry: X, peer-reviewed)
- Peposx-Exhaust: A Lightweight and Efficient Tool for Identification of Short Peptides (2023, SSRN Electronic Journal, preprint)
- Algorithm of Protein Sequence Determination by Combination of the Edman Degradation Method and Shotgun Mass Spectrometry (2018, Biomedical Chemistry: Research and Methods, peer-reviewed)
- The sequence coverage in different methods of mass spectrometry data analysis obtained on model proteins (2017, Biomeditsinskaya Khimiya, peer-reviewed)
- PepExplorer: A Similarity-driven Tool for Analyzing de Novo Sequencing Results (2014, Molecular & Cellular Proteomics, peer-reviewed)
- A comparative study of the accuracy of several de novo sequencing software packages for datasets derived by matrix‐assisted laser desorption/ionisation and electrospray (2008, Rapid Communications in Mass Spectrometry, peer-reviewed)