A comparative study of the accuracy of several de novo sequencing software packages for datasets derived by matrix‐assisted laser desorption/ionisation and electrospray
peer-reviewed · Rapid Communications in Mass Spectrometry · 2008
peer-reviewed · Rapid Communications in Mass Spectrometry · 2008. Scott Bringans et al.
| Date | 2008-11-15 |
| Type | peer-reviewed |
| Venue | Rapid Communications in Mass Spectrometry |
| Publisher | Wiley |
| Contribution | benchmark |
| DOI | 10.1002/rcm.3752 |
| Citations (OpenAlex) | 29 |
| Venue 2-year citedness | 1.80 |
Methods and tools
- MALDI vs ESI de novo software comparison: Benchmarks the accuracy of several de novo sequencing programs on datasets acquired by MALDI and by electrospray.
Methods it uses
Cites (4)
- Assessing peptide de novo sequencing algorithms performance on large and diverse data sets (2007) crossref
- Performance Evaluation of Existing De Novo Sequencing Algorithms (2006) crossref
- PepNovo: de novo peptide sequencing via probabilistic network modeling (2005) crossref
- PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry (2003) crossref
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- The impact of noise and missing fragmentation cleavages on de novo peptide identification algorithms (2022) both
- Precision De Novo Peptide Sequencing Using Mirror Proteases of Ac-LysargiNase and Trypsin for Large-scale Proteomics (2019) both
- Library Design-Facilitated High-Throughput Sequencing of Synthetic Peptide Libraries (2017) both
- Evaluating de novo sequencing in proteomics: already an accurate alternative to database-driven peptide identification? (2017) crossref
- Novor: Real-Time Peptide de Novo Sequencing Software (2015) both
- 193 nm Ultraviolet Photodissociation of Imidazolinylated Lys-N Peptides for De Novo Sequencing (2012) crossref
- De Novo Sequencing and Homology Searching (2012) both
- Algorithms for the de novo sequencing of peptides from tandem mass spectra (2011) crossref
- De NovoSequencing of Tryptic Peptides Derived fromDeinococcus radioduransRibosomal Proteins Using 157 nm Photodissociation MALDI TOF/TOF Mass Spectrometry (2010) crossref
- pNovo: De novo Peptide Sequencing and Identification Using HCD Spectra (2010) crossref
- OVNIp: An open source application facilitating the interpretation, the validation and the edition of proteomics data generated by MS analyses and de novo sequencing (2010) crossref
- Peptide de Novo Sequencing Using 157 nm Photodissociation in a Tandem Time-of-Flight Mass Spectrometer (2010) crossref