DIA_urine_proteomics_biomarker_discovery_abdominal-pain
deposit · DIA · 1 version · 6 papers
Urine DIA from 64 subjects with abdominal pain (Muntel et al. 2015, J Proteome Res), the ‘Pain’ set DeepNovo-DIA and its successors train on. Named as PeptideAtlas titles it.
| Kind | deposit |
| Acquisition | DIA |
| Organisms | Homo sapiens |
Urine DIA from 64 subjects with abdominal pain (Muntel et al. 2015, J Proteome Res), the ‘Pain’ set DeepNovo-DIA and its successors train on. Named as PeptideAtlas titles it.
Versions
as deposited
Where it lives:
- PeptideAtlas · PASS00706
Trained on by (6)
- Advancing Proteomic Analyses with Graph-Based Deep Learning: Protein Inference and DIA De Novo Peptide Sequencing (2025) thesis as deposited
- Disentangling the Complex Multiplexed DIA Spectra in De Novo Peptide Sequencing (2024) preprint as deposited
- BiATNovo: An Attention-based Bidirectional De Novo Sequencing Framework for Data-Independent-Acquisition Mass Spectrometry (2024) preprint as deposited
- BiATNovo: A Self-Attention based Bidirectional Peptide Sequencing Method (2023) preprint as deposited
- Deep Active Learning for De Novo Peptide Sequencing from Data-independent-acquisition Mass Spectrometry (2022) ML conference as deposited
- Deep learning enables de novo peptide sequencing from data-independent-acquisition mass spectrometry (2018) peer-reviewed as deposited
Methods on these papers (4)
- AL-DeepNovo-DIA algorithm
- BiATNovo algorithm
- DIANovo algorithm
- DeepNovo-DIA algorithm
Taken from the describing links only, so a paper that merely ran a tool on this data does not make that tool a method of it.