Supplementary Data for “Comprehensive evaluation of peptide de novo sequencing tools for monoclonal antibody assembly”
deposit · 1 version · 6 papers
Herceptin (trastuzumab) digests deposited with the de novo antibody-assembly evaluation; InstaNovo reuses them as its Herceptin dataset.
| Kind | deposit |
Herceptin (trastuzumab) digests deposited with the de novo antibody-assembly evaluation; InstaNovo reuses them as its Herceptin dataset.
Versions
as deposited
introduced by Comprehensive evaluation of peptide de novo sequencing tools for monoclonal antibody assembly
Where it lives:
- figshare · 10.6084/m9.figshare.21394143
Deposited by (1)
- Comprehensive evaluation of peptide de novo sequencing tools for monoclonal antibody assembly (2023) peer-reviewed as deposited
Used by (5)
- De novo peptide sequencing rescoring and FDR estimation with Winnow (2025) preprint as deposited
- InstaNovo enables diffusion-powered de novo peptide sequencing in large-scale proteomics experiments (2025) peer-reviewed as deposited
- Introducing π-HelixNovo for practical large-scale de novo peptide sequencing (2024) peer-reviewed as deposited
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments (2023) preprint as deposited
- De novo Peptide Sequencing (2016) peer-reviewed as deposited
Methods on these papers (6)
- De novo evaluation for monoclonal-antibody assembly benchmark
- De novo peptide sequencing (Proteome Informatics chapter) review
- InstaNovo algorithm
- InstaNovo+ algorithm
- Winnow post-processor
- π-HelixNovo algorithm
Taken from the describing links only, so a paper that merely ran a tool on this data does not make that tool a method of it.