European Molecular Biology Laboratory
Hinxton, Hinxton, UK, Heidelberg, Germany, Heidelberg · 16 authors
European Molecular Biology Laboratory (Hinxton, Hinxton, UK, Heidelberg, Germany, Heidelberg): 16 authors and 19 papers in the de novo peptide sequencing catalog.
Departments
- European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus
- Protein & Peptide Group
- Structural and Computational Biology Programme
Papers (19)
- AI proteomics: from protein identification to virtual cells (2026, Nature Methods)
- π-MSNet: A billion-scale, AI-ready living proteomics data portal (2026, bioRxiv)
- Quick and clean: Cracking sentences encoded in E. coli by LC–MS/MS, de novo sequencing, and dictionary search (2019, EuPA Open Proteomics)
- Rescuing discarded spectra: Full comprehensive analysis of a minimal proteome (2016, PROTEOMICS)
- Introducing an Asp-Pro Linker in the Synthesis of Random One-Bead-One-Compound Hexapeptide Libraries Compatible with ESI-MS Analysis (2012, ACS Combinatorial Science)
- De novo Sequencing of Proteins With Mass Spectrometry Using the Differential Scanning Technique (2011, Proteome and Protein Analysis)
- How much peptide sequence information is contained in ion trap tandem mass spectra? (2008, Journal of the American Society for Mass Spectrometry)
- Simplified validation of borderline hits of database searches (2008, PROTEOMICS)
- Multi-spectra peptide sequencing and its applications to multistage mass spectrometry (2008, Bioinformatics)
- Sequence similarity‐driven proteomics in organisms with unknown genomes by LC‐MS/MS and automated de novo sequencing (2007, PROTEOMICS)
- Rapid Validation of Protein Identifications with the Borderline Statistical Confidence via De Novo Sequencing and MS BLAST Searches (2006, Journal of Proteome Research)
- The Power and the Limitations of Cross-Species Protein Identification by Mass Spectrometry-driven Sequence Similarity Searches (2004, Molecular & Cellular Proteomics)
- “De Novo” Sequencing of Peptides Recovered from In-Gel Digested Proteins by Nanoelectrospray Tandem Mass Spectrometry (2003, Molecular Biotechnology)
- De Novo Peptide Sequencing by Nanoelectrospray Tandem Mass Spectrometry Using Triple Quadrupole and Quadrupole/Time-of-Flight Instruments (2003, Mass Spectrometry of Proteins and Peptides)
- MultiTag: Multiple Error-Tolerant Sequence Tag Search for the Sequence-Similarity Identification of Proteins by Mass Spectrometry (2003, Analytical Chemistry)
- Charting the Proteomes of Organisms with Unsequenced Genomes by MALDI-Quadrupole Time-of-Flight Mass Spectrometry and BLAST Homology Searching (2001, Analytical Chemistry)
- Automatedde novo sequencing of proteins using the differential scanning technique (2001, PROTEOMICS)
- Rapid de novo peptide sequencing by a combination of nanoelectrospray, isotopic labeling and a quadrupole/time-of-flight mass spectrometer (1997, Rapid Communications in Mass Spectrometry)
- Error-Tolerant Identification of Peptides in Sequence Databases by Peptide Sequence Tags (1994, Analytical Chemistry)