Ghent University
Ghent, Belgium · 25 authors
Ghent University (Ghent, Belgium): 25 authors and 22 papers in the de novo peptide sequencing catalog.
Departments
- Department of Biochemistry
- Department of Biomolecular Medicine, Faculty of Medicine and Health Sciences
Papers (22)
- Iron-chelating activity of Andean Lupinus mutabilis Sweet protein and casein under the INFOGEST in vitro gastrointestinal model: peptide identification, molecular docking, and synthesis (2026, Journal of Functional Foods)
- InstaNovo-P: a de novo peptide sequencing model for phosphoproteomics (2026, Nature Communications)
- MegaPX: fast and space-efficient peptide assignment method using IBF-based multi-indexing (2026, Bioinformatics)
- Discovery of Iron-Chelating Peptides from Lupinus mutabilis via Integrated Purification and In Silico Validation (2026, Foods)
- A living proteomics benchmark for comprehensive evaluation of deep learning-based de novo peptide sequencing tools (2026, Nature Methods (Registered Report))
- Mass spectrometry-based analysis of rheumatoid factor (2025, Frontiers in Immunology)
- Limitations of de novo sequencing in resolving sequence ambiguity (2025, bioRxiv)
- InstaNovo-P: A de novo peptide sequencing model for phosphoproteomics (2025, bioRxiv)
- MegaPX: fast and space-efficient peptide assignment method using IBF-based multi-indexing (2025, bioRxiv)
- Metaproteomics Beyond Databases: Addressing the Challenges and Potentials of De Novo Sequencing (2025, Proteomics)
- Complementarity determining regions in SARS-CoV-2 hybrid immunity (2023, Frontiers in Immunology)
- MS2Rescore: Data-Driven Rescoring Dramatically Boosts Immunopeptide Identification Rates (2022, Molecular & Cellular Proteomics)
- PeptideShaker enables reanalysis of MS-derived proteomics data sets (2015, Nature Biotechnology)
- DeNovoGUI: An Open Source Graphical User Interface for de Novo Sequencing of Tandem Mass Spectra (2014, Journal of Proteome Research)
- MS2PIP: a tool for MS/MS peak intensity prediction (2013, Bioinformatics)
- A workflow for peptide-based proteomics in a poorly sequenced plant: A case study on the plasma membrane proteome of banana (2011, Journal of Proteomics)
- The use of 2D-electrophoresis and de novo sequencing to characterize inter- and intra-cultivar protein polymorphisms in an allopolyploid crop (2011, Phytochemistry)
- A Hybrid, de Novo Based, Genome-Wide Database Search Approach Applied to the Sea Urchin Neuropeptidome (2010, Journal of Proteome Research)
- Functional Proteome Analysis of the Banana Plant (Musa spp.) Using de Novo Sequence Analysis of Derivatized Peptides (2007, Journal of Proteome Research)
- MALDI‐TOF/TOF de novo sequence analysis of 2‐D PAGE‐separated proteins from Halorhodospira halophila, a bacterium with unsequenced genome (2006, ELECTROPHORESIS)
- De novo sequence analysis of N‐terminal sulfonated peptides after in‐gel guanidination (2005, PROTEOMICS)
- A case study of de novo sequence analysis of N-sulfonated peptides by MALDI TOF/TOF mass spectrometry (2004, Journal of the American Society for Mass Spectrometry)