Pacific Northwest National Laboratory
Richland, USA · 31 authors
Pacific Northwest National Laboratory (Richland, USA): 31 authors and 18 papers in the de novo peptide sequencing catalog.
Departments
- Applied Decisions Systems and Analytics Group
- Applied Statistics and Computational Modeling Group
- Biological Sciences Division
- Chemical & Biological Signatures Group
- Environmental Molecular Sciences Laboratory
Papers (18)
- MARLOWE: Taxonomic Characterization of Unknown Samples for Forensics Using De Novo Peptide Identification (2025, bioRxiv)
- MARLOWE: An Untargeted Proteomics, Statistical Approach to Taxonomic Classification for Forensics (2025, Journal of Proteome Research)
- Uncovering Hidden Members and Functions of the Soil Microbiome Using De Novo Metaproteomics (2022, Journal of Proteome Research)
- Metaproteomic Characterization of Forensic Samples (2022, SSRN Electronic Journal)
- Flying blind, or just flying under the radar? The underappreciated power of de novo methods of mass spectrometric peptide identification (2020, Protein Science)
- De Novo Sequencing of Peptides from High‐Resolution Bottom‐Up Tandem Mass Spectra using Top‐Down Intended Methods (2017, PROTEOMICS)
- Top-down analysis of protein samples by de novo sequencing techniques (2016, Bioinformatics)
- De Novo Sequencing of Peptides from Top-Down Tandem Mass Spectra (2015, Journal of Proteome Research)
- De Novo Protein Sequencing by Combining Top-Down and Bottom-Up Tandem Mass Spectra (2014, Journal of Proteome Research)
- De novo analysis of protein N-terminal sequence utilizing MALDI signal enhancing derivatization with Br signature (2012, Analytical and Bioanalytical Chemistry)
- C-terminal de novo sequencing of peptides using oxazolone-based derivatization with bromine signature (2011, Analytical Biochemistry)
- Identification of Disulfide Bonds in Protein Proteolytic Degradation Products Using de novo-Protein Unique Sequence Tags Approach (2010, Journal of Proteome Research)
- De Novo Sequencing of Unique Sequence Tags for Discovery of Post-Translational Modifications of Proteins (2008, Analytical Chemistry)
- Sequence optimization as an alternative to de novo analysis of tandem mass spectrometry data (2004, Bioinformatics)
- Constrained De Novo peptide identification via multi-objective optimization (2004, 18th International Parallel and Distributed Processing Symposium, 2004. Proceedings)
- A model of random sequences for de novo peptide sequencing (2003, Third IEEE Symposium on Bioinformatics and Bioengineering, 2003. Proceedings)
- Improved peptide sequencing using isotope information inherent in tandem mass spectra (2003, Rapid Communications in Mass Spectrometry)
- Differential stable isotope labeling of peptides for quantitation and de novo sequence derivation (2001, Rapid Communications in Mass Spectrometry)