Distilling Non-Autoregressive Model Knowledge for Autoregressive De Novo Peptide Sequencing
preprint · OpenReview · 2025
preprint · OpenReview · 2025. Xiang Zhang (Shanghai AI Lab) et al.
| Date | 2025-02-05 |
| Type | preprint |
| Venue | OpenReview |
| Publisher | OpenReview |
| Contribution | algorithm |
| Link | https://openreview.net/forum?id=I2ZYngkRW6 |
Methods and tools
- CrossNovo: AR + NAR hybrid
Trained on
- MassIVE-KB (v1 30M-PSM split (Casanovo)) · 10.5281/zenodo.14967861
Evaluated on
- Monoclonal antibody de novo assembly (as deposited) · MSV000079801
- Nine-species benchmark (original (DeepNovo, 2017)) · MSV000081382, PXD003868 (provenance), PXD004325 (provenance), PXD004424 (provenance), PXD004467 (provenance), PXD004536 (provenance), PXD004565 (provenance), PXD004947 (provenance), PXD004948 (provenance), PXD005025 (provenance)
- Nine-species benchmark (revised (build not stated)) · MSV000090982