Zijie Qiu

7 papers in the catalog · China

Zijie Qiu: 7 papers in the catalog · China · Fudan University, Shanghai Artificial Intelligence Laboratory · Works on CrossNovo, OmniNovo, RankNovo

Affiliations

Fudan University · Research Institute of Intelligent Complex Systems
Shanghai Artificial Intelligence Laboratory

Elsewhere

ORCID 0009-0007-2461-2641 · OpenAlex

Papers

Accurate de novo sequencing of the modified proteome with OmniNovo (2025, arXiv)
Bidirectional Representations Augmented Autoregressive Biological Sequence Generation (2025, NeurIPS 2025)
Curriculum Learning for Biological Sequence Prediction: The Case of De Novo Peptide Sequencing (2025, ICML 2025)
Distilling Non-Autoregressive Model Knowledge for Autoregressive De Novo Peptide Sequencing (2025, ICLR 2025)
π-PrimeNovo: an accurate and efficient non-autoregressive deep learning model for de novo peptide sequencing (2025, Nature Communications)
RankNovo: A Universal Reranking Approach for Robust De Novo Peptide Sequencing (2024, ICLR 2025)
π-PrimeNovo: an accurate and efficient non-autoregressive deep learning model for de novo peptide sequencing (2024, bioRxiv)

Methods and tools

CrossNovo, OmniNovo, RankNovo, RefineNovo, π-PrimeNovo

Co-authors (27)

Ranked by Newman fractional collaboration strength, so a pair on a two-author paper counts for more than a pair on a 50-author consortium paper.

Sheng Xu strength 0.78, 7 shared
Siqi Sun strength 0.78, 7 shared
Xiang Zhang (Shanghai AI Lab) strength 0.78, 7 shared
Zhiqiang Gao strength 0.78, 7 shared
Nanqing Dong strength 0.71, 6 shared
Jiaqi Wei strength 0.64, 5 shared
Zhi Jin strength 0.54, 5 shared
Boyan Sun strength 0.13, 2 shared
Cheng Chang strength 0.13, 2 shared
Guangshuai Wang strength 0.13, 2 shared
Guibin Wang strength 0.13, 2 shared
Laks V.S. Lakshmanan strength 0.13, 2 shared
Leyuan Li strength 0.13, 2 shared
Muhammad Abdul-Mageed strength 0.13, 2 shared
Tianze Ling strength 0.13, 2 shared
Wanli Ouyang strength 0.13, 2 shared
Kai Zou strength 0.12, 1 shared
Bowen Zhou strength 0.07, 1 shared
Chenyu You strength 0.07, 1 shared
Lei Bai strength 0.07, 1 shared
Liujia Qian strength 0.07, 1 shared
Ning Ding strength 0.07, 1 shared
Shang Qu strength 0.07, 1 shared
Tiannan Guo strength 0.07, 1 shared
Xinjie Mao strength 0.07, 1 shared
Yuejin Yang strength 0.07, 1 shared
Yuhan Chen strength 0.07, 1 shared

Seen in the charts

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