Thilo Muth

11 papers in the catalog · Germany, Magdeburg

Thilo Muth: 11 papers in the catalog · Germany, Magdeburg · Federal Institute for Materials Research and Testing (BAM), Max Planck Institute for Dynamics of Complex Technical Systems · Works on De novo evaluation for monoclonal-antibody assembly, De…

Affiliations

• Federal Institute for Materials Research and Testing (BAM)
• Max Planck Institute for Dynamics of Complex Technical Systems
• Robert Koch Institute · Centre for Artificial Intelligence in Public Health Research
• Robert Koch Institute · Data Competence Center MF 2
• Robert Koch Institute · Research Group Bioinformatics
• glyXera GmbH

Elsewhere

ORCID 0000-0001-8304-2684 · OpenAlex

Papers

• MegaPX: fast and space-efficient peptide assignment method using IBF-based multi-indexing (2026, Bioinformatics)
• From Identification to Insight: Making Full Use of the Diagnostic Potential of MS/MS Proteotyping in Clinical Microbiology Using Efficient Bioinformatics (2025, Journal of Proteome Research)
• Limitations of de novo sequencing in resolving sequence ambiguity (2025, bioRxiv)
• MegaPX: fast and space-efficient peptide assignment method using IBF-based multi-indexing (2025, bioRxiv)
• Metaproteomics Beyond Databases: Addressing the Challenges and Potentials of De Novo Sequencing (2025, Proteomics)
• Comprehensive evaluation of peptide de novo sequencing tools for monoclonal antibody assembly (2023, Briefings in Bioinformatics)
• Current state, existing challenges, and promising progress for de novo sequencing and assembly of monoclonal antibodies (2022, bioRxiv)
• A potential golden age to come—current tools, recent use cases, and future avenues for de novo sequencing in proteomics (2018, Proteomics)
• Evaluating de novo sequencing in proteomics: already an accurate alternative to database-driven peptide identification? (2017, Briefings in Bioinformatics)
• Tandem Mass Spectrum Sequencing: An Alternative to Database Search Engines in Shotgun Proteomics (2016, Advances in Experimental Medicine and Biology)
• DeNovoGUI: An Open Source Graphical User Interface for de Novo Sequencing of Tandem Mass Spectra (2014, Journal of Proteome Research)

Methods and tools

De novo evaluation for monoclonal-antibody assembly, De novo sequence-ambiguity benchmark, DeNovoGUI, Evaluating de novo sequencing vs database-driven identification, Golden age of de novo review, MS/MS proteotyping in clinical microbiology (perspective), MegaPX, Metaproteomics de novo review, Tandem mass spectrum sequencing (review)

Co-authors (24)

Ranked by Newman fractional collaboration strength, so a pair on a two-author paper counts for more than a pair on a 50-author consortium paper.

• Bernhard Y. Renard strength 1.83, 4 shared
• Tanja Holstein strength 0.92, 4 shared
• Denis Beslic strength 0.75, 4 shared
• Marc Vaudel strength 0.75, 3 shared
• Ahmad Lutfi strength 0.67, 2 shared
• Sandro Andreotti strength 0.67, 2 shared
• Georg Tscheuschner strength 0.50, 2 shared
• Michael G. Weller strength 0.50, 2 shared
• Lennart Martens strength 0.42, 3 shared
• Erdmann Rapp strength 0.42, 2 shared
• Harald Barsnes strength 0.42, 2 shared
• Felix Hartkopf strength 0.33, 1 shared
• Gelio Alves strength 0.33, 1 shared
• Roger Karlsson strength 0.33, 1 shared
• Yi-Kuo Yu strength 0.33, 1 shared
• Laura L. Elo strength 0.25, 2 shared
• Sam van Puyenbroeck strength 0.25, 2 shared
• Tim Van Den Bossche strength 0.25, 2 shared
• Tomi Suomi strength 0.25, 2 shared
• Frode S. Berven strength 0.25, 1 shared
• Christian G. Huber strength 0.17, 1 shared
• Lisa Weilnbock strength 0.17, 1 shared
• Robbin Bouwmeester strength 0.11, 1 shared
• Tine Claeys strength 0.11, 1 shared

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