Nuno Bandeira

8 papers in the catalog · USA

Nuno Bandeira: 8 papers in the catalog · USA · University of California San Diego, University of California San Diego · Works on AI proteomics perspective, Automated mAb de novo (Bandeira SPS), MS-Dictionary

Affiliations

University of California San Diego · Center for Computational Mass Spectrometry, Department of Computer Science and Engineering
University of California San Diego · Department of Computer Science and Engineering
University of California San Diego · Skaggs School of Pharmacy and Pharmaceutical Sciences

Elsewhere

ORCID 0000-0001-8385-3655 · OpenAlex

Papers

AI proteomics: from protein identification to virtual cells (2026, Nature Methods)
De Novo MS/MS Sequencing of Native Human Antibodies (2017, Journal of Proteome Research)
Sequencing-Grade De novo Analysis of MS/MS Triplets (CID/HCD/ETD) From Overlapping Peptides (2013, Journal of Proteome Research)
Shotgun Protein Sequencing with Meta-contig Assembly (2012, Molecular & Cellular Proteomics)
Spectral Profiles, a Novel Representation of Tandem Mass Spectra and Their Applications for de Novo Peptide Sequencing and Identification (2009, Molecular & Cellular Proteomics)
Spectral Dictionaries: Integrating de novo Peptide Sequencing with Database Search of Tandem Mass Spectra (2009, Molecular & Cellular Proteomics)
Automated de novo protein sequencing of monoclonal antibodies (2008, Nature Biotechnology)
Shotgun Protein Sequencing by Tandem Mass Spectra Assembly (2004, Analytical Chemistry)

Methods and tools

AI proteomics perspective, Automated mAb de novo (Bandeira SPS), MS-Dictionary, MS-Profile, MS/MS Triplets, Meta-SPS, Native antibody de novo MS/MS, Shotgun Protein Sequencing

Co-authors (77)

Ranked by Newman fractional collaboration strength, so a pair on a two-author paper counts for more than a pair on a 50-author consortium paper.

Pavel A. Pevzner strength 1.42, 4 shared
Adrian Guthals strength 0.96, 3 shared
Karl R. Clauser strength 0.83, 2 shared
Sangtae Kim strength 0.83, 2 shared
Jennie R. Lill strength 0.38, 2 shared
Haixu Tang strength 0.35, 2 shared
Ari Frank strength 0.33, 1 shared
Nitin Gupta strength 0.33, 1 shared
Vineet Bafna strength 0.33, 1 shared
David Arnott strength 0.25, 1 shared
Vineet Pham strength 0.25, 1 shared
Gerald Nakamura strength 0.12, 1 shared
Jeremy Stinson strength 0.12, 1 shared
Laura Murray strength 0.12, 1 shared
Wendy Sandoval strength 0.12, 1 shared
Yongmei Chen strength 0.12, 1 shared
Yutian Gan strength 0.12, 1 shared
Asif Khan strength 0.02, 1 shared
Benjamin Boyang Sun strength 0.02, 1 shared
Bing Zhang strength 0.02, 1 shared
Chao Liu strength 0.02, 1 shared
Chen Li strength 0.02, 1 shared
Cheng Chang strength 0.02, 1 shared
Chris Sander strength 0.02, 1 shared
Christopher M. Overall strength 0.02, 1 shared
Eric W. Deutsch strength 0.02, 1 shared
Fuchu He strength 0.02, 1 shared
Gilbert S. Omenn strength 0.02, 1 shared
Henning Hermjakob strength 0.02, 1 shared
Huanhuan Gao strength 0.02, 1 shared
Huilin Jin strength 0.02, 1 shared
Jiangning Song strength 0.02, 1 shared
Jianhua Yao strength 0.02, 1 shared
Jiaxing Huang strength 0.02, 1 shared
Jonathan R. Krieger strength 0.02, 1 shared
Juan Antonio Vizcaíno strength 0.02, 1 shared
Jun A strength 0.02, 1 shared
Jürgen Cox strength 0.02, 1 shared
Kaicheng Yu strength 0.02, 1 shared
Kang Zhang strength 0.02, 1 shared

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