Casanovo digestion enzyme bias data

deposit · DDA · 2 versions · 6 papers

Data supporting “Accounting for digestion enzyme bias in Casanovo”.
Kind deposit
Acquisition DDA

Data supporting “Accounting for digestion enzyme bias in Casanovo”.

Versions

as deposited

released 2024-06-28 · introduced by Accounting for Digestion Enzyme Bias in Casanovo

Where it lives:

MSKB-final (dIon)

Casanovo’s official MassIVE-KB train/test partition, processed to Lance, with a small validation set carved from training by canonical peptidoform (seed 42). A 196,979-spectrum charge 1-4 subset of the test split is kept for comparisons with Casanovo.

train 1,989,996 · validation 10,004 · test 200,000 · released 2026-10-09 · introduced by dIon: Fragmentation-Based Invariance for Self-Supervised Learning of Tandem Mass Spectra

Where it lives:

Deposited by (2)

Each of these introduced a DIFFERENT version, listed beside it; a deposit itself happens once.

Trained on by (5)

Evaluated on by (5)

Used by (1)

Papers that ran on it where the catalog has not recorded whether for training or for evaluation.

Methods on these papers (5)

Taken from the describing links only, so a paper that merely ran a tool on this data does not make that tool a method of it.

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