Cascadia

algorithm · Transformer (AR)

Cascadia: algorithm · Transformer (AR). Transformer for DIA

Transformer for DIA

Kind	algorithm
Deep learning	yes
Acquisition	DIA
Family	Transformer (AR)

Code

• https://github.com/Noble-Lab/cascadia

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Papers describing it (2)

• A transformer model for de novo sequencing of data independent acquisition mass spectrometry data (2024, bioRxiv, preprint)
• A transformer model for de novo sequencing of data independent acquisition mass spectrometry data (2025, Nature Methods, peer-reviewed)

Authors (9)

Justin Sanders, Bo Wen, Paul Rudnick, Rich Johnson, Christine C. Wu, Sewoong Oh, Michael J. MacCoss, William Stafford Noble, Michael Riffle

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