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algorithm · Transformer (AR)

Cascadia: algorithm · Transformer (AR). Transformer for DIA

Transformer for DIA

Kind	algorithm
Family	Transformer (AR)
Deep learning	yes
Acquisition	DIA

Papers

• A transformer model for de novo sequencing of data independent acquisition mass spectrometry data (2025, Nature Methods, peer-reviewed)
• A transformer model for de novo sequencing of data independent acquisition mass spectrometry data (2024, bioRxiv, preprint)

Authors (9)

Justin Sanders, Bo Wen, Paul Rudnick, Rich Johnson, Christine C. Wu, Sewoong Oh, Michael J. MacCoss, William Stafford Noble, Michael Riffle

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