University of Southern California
Los Angeles, USA · 7 authors
University of Southern California (Los Angeles, USA): 7 authors and 19 papers in the de novo peptide sequencing catalog.
Departments
- Department of Biology, Department of Mathematics
- Departments of Mathematics, Computer Science and Molecular Biology
- Molecular and Computational Biology Program, Department of Biological Sciences
Papers (19)
- Bridging the Gap between Database Search and De Novo Peptide Sequencing with SearchNovo (2025, ICLR 2025)
- Bridging the Gap between Database Search and De Novo Peptide Sequencing with SearchNovo (2024, bioRxiv)
- NovoBench: Benchmarking Deep Learning-based De Novo Peptide Sequencing Methods in Proteomics (2024, NeurIPS 2024)
- AdaNovo: Adaptive De Novo Peptide Sequencing with Conditional Mutual Information (2024, ICML 2024)
- De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments (2020, Cell Systems)
- UniNovo: a universal tool for de novo peptide sequencing (2013, Bioinformatics)
- Constrained De Novo Sequencing of Conotoxins (2012, Journal of Proteome Research)
- Spectral Profiles, a Novel Representation of Tandem Mass Spectra and Their Applications for de Novo Peptide Sequencing and Identification (2009, Molecular & Cellular Proteomics)
- Spectral Dictionaries: Integrating de novo Peptide Sequencing with Database Search of Tandem Mass Spectra (2009, Molecular & Cellular Proteomics)
- Automated de novo protein sequencing of monoclonal antibodies (2008, Nature Biotechnology)
- MSNovo: A Dynamic Programming Algorithm for de Novo Peptide Sequencing via Tandem Mass Spectrometry (2007, Analytical Chemistry)
- De Novo Peptide Sequencing and Identification with Precision Mass Spectrometry (2007, Journal of Proteome Research)
- Rapid Validation of Protein Identifications with the Borderline Statistical Confidence via De Novo Sequencing and MS BLAST Searches (2006, Journal of Proteome Research)
- PepNovo: de novo peptide sequencing via probabilistic network modeling (2005, Analytical Chemistry)
- Shotgun Protein Sequencing by Tandem Mass Spectra Assembly (2004, Analytical Chemistry)
- Algorithms for de novo peptide sequencing using tandem mass spectrometry (2004, Drug Discovery Today: BIOSILICO)
- A Suboptimal Algorithm for De Novo Peptide Sequencing via Tandem Mass Spectrometry (2003, Journal of Computational Biology)
- A Dynamic Programming Approach to De Novo Peptide Sequencing via Tandem Mass Spectrometry (2001, Journal of Computational Biology)
- De novo peptide sequencing via tandem mass spectrometry (1999, Journal of Computational Biology)