EigenMS: De Novo Analysis of Peptide Tandem Mass Spectra by Spectral Graph Partitioning
peer-reviewed · Lecture Notes in Computer Science · 2010
peer-reviewed · Lecture Notes in Computer Science · 2010. Marshall Bern et al.
| Date | 2010-07-13 |
| Type | peer-reviewed |
| Venue | Lecture Notes in Computer Science |
| Publisher | Springer Berlin Heidelberg |
| Contribution | algorithm |
| DOI | 10.1007/11415770_27 |
| Citations (OpenAlex) | 13 |
| Venue 2-year citedness | 1.54 |
Methods and tools
- EigenMS: Spectral graph partitioning de novo sequencer with robust TOF mass recalibration.
Cites (16)
- SPIDER: software for protein identification from sequence tags with de novo sequencing error (2005) crossref
- PPM-chain - de novo peptide identification program comparable in performance to sequest (2004) crossref
- High-Throughput Identification of Proteins and Unanticipated Sequence Modifications Using a Mass-Based Alignment Algorithm for MS/MS de Novo Sequencing Results (2004) crossref
- GutenTag: High-Throughput Sequence Tagging via an Empirically Derived Fragmentation Model (2003) crossref
- PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry (2003) crossref
- An Effective Algorithm for the Peptide De Novo Sequencing from MS/MS Spectrum (2003) crossref
- On de novo interpretation of tandem mass spectra for peptide identification (2003) crossref
- New computational approaches for de novo peptide sequencing from MS/MS experiments (2002) crossref
- A Dynamic Programming Approach to De Novo Peptide Sequencing via Tandem Mass Spectrometry (2001) crossref
- Implementation and Uses of Automated de Novo Peptide Sequencing by Tandem Mass Spectrometry (2001) crossref
- Charting the Proteomes of Organisms with Unsequenced Genomes by MALDI-Quadrupole Time-of-Flight Mass Spectrometry and BLAST Homology Searching (2001) crossref
- Automatedde novo sequencing of proteins using the differential scanning technique (2001) crossref
- De novo peptide sequencing via tandem mass spectrometry (1999) crossref
- Role of Accurate Mass Measurement (±10 ppm) in Protein Identification Strategies Employing MS or MS/MS and Database Searching (1999) crossref
- Error-Tolerant Identification of Peptides in Sequence Databases by Peptide Sequence Tags (1994) crossref
- Fast algorithm for peptide sequencing by mass spectroscopy (1990) crossref