An effective algorithm for peptide de novo sequencing from MS/MS spectra
peer-reviewed · Journal of Computer and System Sciences · 2005
peer-reviewed · Journal of Computer and System Sciences · 2005. Bin Ma et al.
| Date | 2005-05-01 |
| Type | peer-reviewed |
| Venue | Journal of Computer and System Sciences |
| Publisher | Elsevier BV |
| Contribution | algorithm |
| DOI | 10.1016/j.jcss.2004.12.001 |
| Citations (OpenAlex) | 44 |
| Venue 2-year citedness | 1.00 |
Methods and tools
- PEAKS: Commercial DP-based de novo
Cites (9)
- High-Throughput Identification of Proteins and Unanticipated Sequence Modifications Using a Mass-Based Alignment Algorithm for MS/MS de Novo Sequencing Results (2004) both
- PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry (2003) crossref
- A Dynamic Programming Approach to De Novo Peptide Sequencing via Tandem Mass Spectrometry (2001) both
- De novo peptide sequencing via tandem mass spectrometry (1999) both
- Sequence database searches via de novo peptide sequencing by tandem mass spectrometry (1997) both
- Error-Tolerant Identification of Peptides in Sequence Databases by Peptide Sequence Tags (1994) both
- Fast algorithm for peptide sequencing by mass spectroscopy (1990) both
- Computer program (SEQPEP) to aid in the interpretation of high-energy collision tandem mass spectra of peptides (1989) both
- PAAS 3: A computer program to determine probable sequence of peptides from mass spectrometric data (1984) both
Cited by (27)
- An algorithm for peptide de novo sequencing from a group of SILAC labeled MS/MS spectra (2025) crossref
- Algorithms for de-novo sequencing of peptides by tandem mass spectrometry: A review (2023) crossref
- Classification of B and Y Ions in Peptide MS/MS Spectra Based on Machine Learning (2023) both
- Computationally instrument-resolution-independent de novo peptide sequencing for high-resolution devices (2021) crossref
- De novo sequencing of proteins by mass spectrometry (2020) both
- Flying blind, or just flying under the radar? The underappreciated power of de novo methods of mass spectrometric peptide identification (2020) crossref
- Library Design-Facilitated High-Throughput Sequencing of Synthetic Peptide Libraries (2017) both
- CycloAnt (2017) crossref
- Filling a Protein Scaffold With a Reference (2017) crossref
- De novo Peptide Sequencing (2016) crossref
- Filling a Protein Scaffold with a Reference (2016) both
- Novor: Real-Time Peptide de Novo Sequencing Software (2015) both
- An Effective Algorithm for Peptide de novo Sequencing from Mixture MS/MS Spectra (2014) crossref
- NovoHCD: De novo Peptide Sequencing From HCD Spectra (2014) crossref
- A multi-edge graph based de novo peptide sequencing method for HCD spectra (2013) crossref
- DE NOVO SEQUENCING WITH LIMITED NUMBER OF POST-TRANSLATIONAL MODIFICATIONS PER PEPTIDE (2013) crossref
- Tutorial on de novo peptide sequencing using MS/MS mass spectrometry (2012) crossref
- De Novo Sequencing and Homology Searching (2012) both
- ProbPS: A new model for peak selection based on quantifying the dependence of the existence of derivative peaks on primary ion intensity (2011) both
- Algorithm Development of de novo Peptide Sequencing Via Tandem Mass Spectrometry (2010) crossref
- TVNovo: De novo peptide sequencing for high resolution LTQ-FT mass spectrometry using virtual database searching (2010) crossref
- Identification of a novel Plasmopara halstedii elicitor protein combining de novo peptide sequencing algorithms and RACE-PCR (2010) semanticscholar
- Better score function for peptide identification with ETD MS/MS spectra (2010) both
- Automated protein (re)sequencing with MS/MS and a homologous database yields almost full coverage and accuracy (2009) crossref
- Spectral Dictionaries: Integrating de novo Peptide Sequencing with Database Search of Tandem Mass Spectra (2009) both
- Peptide De Novo Sequencing with MS/MS (2008) crossref
- ON PREPROCESSING AND ANTISYMMETRY IN DE NOVO PEPTIDE SEQUENCING: IMPROVING EFFICIENCY AND ACCURACY (2008) crossref