Michael Riffle

4 papers in the catalog · USA

Michael Riffle: 4 papers in the catalog · USA · University of Washington · Works on Casanovo, CasanovoGUI, Cascadia

Affiliations

• University of Washington · Department of Genome Sciences

Elsewhere

ORCID 0000-0003-1633-8607 · OpenAlex

Papers

• CasanovoGUI: a cross-platform desktop application for deep learning-based de novo peptide sequencing with Casanovo (2026, bioRxiv)
• Improvements to Casanovo, a Deep Learning De Novo Peptide Sequencer (2025, Journal of Proteome Research)
• Improvements to CasaNovo, a deep learning de novo peptide sequencer (2025, bioRxiv)
• A transformer model for de novo sequencing of data independent acquisition mass spectrometry data (2025, Nature Methods)

Methods and tools

Casanovo, CasanovoGUI, Cascadia

Co-authors (18)

Ranked by Newman fractional collaboration strength, so a pair on a two-author paper counts for more than a pair on a 50-author consortium paper.

• Bo Wen strength 0.47, 4 shared
• Michael J. MacCoss strength 0.47, 4 shared
• William Stafford Noble strength 0.47, 4 shared
• Wout Bittremieux strength 0.35, 3 shared
• Justin Sanders strength 0.27, 3 shared
• Sewoong Oh strength 0.27, 3 shared
• Kai Li strength 0.20, 1 shared
• Chris Hsu strength 0.15, 2 shared
• Daniela Klaproth-Andrade strength 0.15, 2 shared
• Gwenneth Straub strength 0.15, 2 shared
• Lingwen Xu strength 0.15, 2 shared
• Melih Yilmaz strength 0.15, 2 shared
• Varun Ananth strength 0.15, 2 shared
• William E. Fondrie strength 0.15, 2 shared
• Christine C. Wu strength 0.12, 1 shared
• Paul Rudnick strength 0.12, 1 shared
• Rich Johnson strength 0.12, 1 shared
• Marina Pominova strength 0.07, 1 shared

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