University of California System
Oakland, USA · 4 authors
University of California System (Oakland, USA): 4 authors and 25 papers in the de novo peptide sequencing catalog.
Papers (25)
- AI proteomics: from protein identification to virtual cells (2026, Nature Methods)
- De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments (2020, Cell Systems)
- De Novo Peptide Sequencing Reveals a Vast Cyclopeptidome in Human Gut and Other Environments (2019, bioRxiv)
- Antibody de novo Sequencing (2017, Analytical Characterization of Biotherapeutics)
- A multi-protease, multi-dissociation, bottom-up-to-top-down proteomic view of the Loxosceles intermedia venom (2017, Scientific Data)
- De Novo MS/MS Sequencing of Native Human Antibodies (2017, Journal of Proteome Research)
- Neutron-encoded Signatures Enable Product Ion Annotation From Tandem Mass Spectra (2013, Molecular & Cellular Proteomics)
- Sequencing-Grade De novo Analysis of MS/MS Triplets (CID/HCD/ETD) From Overlapping Peptides (2013, Journal of Proteome Research)
- Shotgun Protein Sequencing with Meta-contig Assembly (2012, Molecular & Cellular Proteomics)
- The spectral networks paradigm in high throughput mass spectrometry (2012, Molecular BioSystems)
- A mass spectrometry–guided genome mining approach for natural product peptidogenomics (2011, Nature Chemical Biology)
- Multiplex De Novo Sequencing of Peptide Antibiotics (2011, Journal of Computational Biology)
- Gapped Spectral Dictionaries and Their Applications for Database Searches of Tandem Mass Spectra (2011, Molecular & Cellular Proteomics)
- Multiplex De Novo Sequencing of Peptide Antibiotics (2011, Lecture Notes in Computer Science)
- Gapped Spectral Dictionaries and Their Applications for Database Searches of Tandem Mass Spectra (2010, Lecture Notes in Computer Science)
- Dereplication and de novo sequencing of nonribosomal peptides (2009, Nature Methods)
- Spectral Profiles, a Novel Representation of Tandem Mass Spectra and Their Applications for de Novo Peptide Sequencing and Identification (2009, Molecular & Cellular Proteomics)
- Spectral Dictionaries: Integrating de novo Peptide Sequencing with Database Search of Tandem Mass Spectra (2009, Molecular & Cellular Proteomics)
- Automated de novo protein sequencing of monoclonal antibodies (2008, Nature Biotechnology)
- Multi-spectra peptide sequencing and its applications to multistage mass spectrometry (2008, Bioinformatics)
- De Novo Sequencing of Nonribosomal Peptides (2008, Lecture Notes in Computer Science)
- Shotgun Protein Sequencing: Assembly of Peptide Tandem Mass Spectra from Mixtures of Modified Proteins (2007, Molecular & Cellular Proteomics)
- Spectral Networks: A New Approach to De Novo Discovery of Protein Sequences and Posttranslational Modifications (2007, BioTechniques)
- Protein identification by spectral networks analysis (2007, Proceedings of the National Academy of Sciences)
- Shotgun Protein Sequencing by Tandem Mass Spectra Assembly (2004, Analytical Chemistry)