St. Petersburg State University

St. Petersburg, St. Petersburg, Russia · 4 authors

St. Petersburg State University (St. Petersburg, St. Petersburg, Russia): 4 authors and 34 papers in the de novo peptide sequencing catalog.

Departments

Center for Algorithmic Biotechnology, Institute of Translational Biomedicine

Authors (4)

Kira Vyatkina, Alexey Gurevich, Andrey Prjibelski, Pavel A. Pevzner

Papers (34)

Application of Top-Down Deconvolution Tools to Bottom-Up Mass Spectrometry Data: Advantages and Limitations (2022, Springer Proceedings in Physics)
Validation of De Novo Peptide Sequences with Bottom-Up Tag Convolution (2021, Proteomes)
De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments (2020, Cell Systems)
De Novo Peptide Sequencing Reveals a Vast Cyclopeptidome in Human Gut and Other Environments (2019, bioRxiv)
De Novo Sequencing of Proteins and Peptides: Algorithms, Applications, Perspectives (2018, Biomedical Chemistry: Research and Methods)
De Novo Sequencing of Peptides from High‐Resolution Bottom‐Up Tandem Mass Spectra using Top‐Down Intended Methods (2017, PROTEOMICS)
De Novo Sequencing of Top-Down Tandem Mass Spectra: A Next Step towards Retrieving a Complete Protein Sequence (2017, Proteomes)
Top-down analysis of protein samples by de novo sequencing techniques (2016, Bioinformatics)
De Novo Sequencing of Peptides from Top-Down Tandem Mass Spectra (2015, Journal of Proteome Research)
De Novo Protein Sequencing by Combining Top-Down and Bottom-Up Tandem Mass Spectra (2014, Journal of Proteome Research)
Application of de novo sequencing tools to study abiogenic peptide formations by tandem mass spectrometry. The case of homo‐peptides from glutamic acid complicated by substitutions of hydrogen by sodium or potassium atoms (2014, Rapid Communications in Mass Spectrometry)
UniNovo: a universal tool for de novo peptide sequencing (2013, Bioinformatics)
Multiplex De Novo Sequencing of Peptide Antibiotics (2011, Journal of Computational Biology)
Gapped Spectral Dictionaries and Their Applications for Database Searches of Tandem Mass Spectra (2011, Molecular & Cellular Proteomics)
Multiplex De Novo Sequencing of Peptide Antibiotics (2011, Lecture Notes in Computer Science)
Gapped Spectral Dictionaries and Their Applications for Database Searches of Tandem Mass Spectra (2010, Lecture Notes in Computer Science)
Dereplication and de novo sequencing of nonribosomal peptides (2009, Nature Methods)
Spectral Profiles, a Novel Representation of Tandem Mass Spectra and Their Applications for de Novo Peptide Sequencing and Identification (2009, Molecular & Cellular Proteomics)
Spectral Dictionaries: Integrating de novo Peptide Sequencing with Database Search of Tandem Mass Spectra (2009, Molecular & Cellular Proteomics)
Automated de novo protein sequencing of monoclonal antibodies (2008, Nature Biotechnology)
Multi-spectra peptide sequencing and its applications to multistage mass spectrometry (2008, Bioinformatics)
De Novo Sequencing of Nonribosomal Peptides (2008, Lecture Notes in Computer Science)
Sequence similarity‐driven proteomics in organisms with unknown genomes by LC‐MS/MS and automated de novo sequencing (2007, PROTEOMICS)
Shotgun Protein Sequencing: Assembly of Peptide Tandem Mass Spectra from Mixtures of Modified Proteins (2007, Molecular & Cellular Proteomics)
Protein identification by spectral networks analysis (2007, Proceedings of the National Academy of Sciences)
De Novo Peptide Sequencing and Identification with Precision Mass Spectrometry (2007, Journal of Proteome Research)
MODELING AND CHARACTERIZATION OF MULTI-CHARGE MASS SPECTRA FOR PEPTIDE SEQUENCING (2006, Journal of Bioinformatics and Computational Biology)
Rapid Validation of Protein Identifications with the Borderline Statistical Confidence via De Novo Sequencing and MS BLAST Searches (2006, Journal of Proteome Research)
CHARACTERIZATION OF MULTI-CHARGE MASS SPECTRA FOR PEPTIDE SEQUENCING (2005, Proceedings of the 4th Asia-Pacific Bioinformatics Conference)
Peptide Sequence Tags for Fast Database Search in Mass-Spectrometry (2005, Journal of Proteome Research)
InsPecT: Identification of Posttranslationally Modified Peptides from Tandem Mass Spectra (2005, Analytical Chemistry)
PepNovo: de novo peptide sequencing via probabilistic network modeling (2005, Analytical Chemistry)
Shotgun Protein Sequencing by Tandem Mass Spectra Assembly (2004, Analytical Chemistry)
De novo peptide sequencing via tandem mass spectrometry (1999, Journal of Computational Biology)

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