University of Southern Denmark
Odense, Denmark · 19 authors
University of Southern Denmark (Odense, Denmark): 19 authors and 41 papers in the de novo peptide sequencing catalog.
Departments
- Danish Institute for Advanced Study
- Department of Biochemistry and Molecular Biology
Papers (41)
- AI proteomics: from protein identification to virtual cells (2026, Nature Methods)
- EThcD as a Unique Tool for the Top-Down De Novo Sequencing of Intact Natural Ranid Amphibian Peptides (2024, Analytical Chemistry)
- Tandem Mass Spectrometry de novo Sequencing of the Skin Defense Peptides of the Central Slovenian Agile Frog Rana dalmatina (2023, Molecules)
- Mass spectrometry in de novo sequencing of the skin peptides from Arkhangelsk, Russia Rana temporaria: The variability of secreted AMPs in different populations (2023, International Journal of Mass Spectrometry)
- The dental proteome of Homo antecessor (2020, Nature)
- Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny (2019, Nature)
- SpotLight Proteomics—A IgG-Enrichment Phenotype Profiling Approach with Clinical Implications (2019, International Journal of Molecular Sciences)
- Quick and clean: Cracking sentences encoded in E. coli by LC–MS/MS, de novo sequencing, and dictionary search (2019, EuPA Open Proteomics)
- Analysis of skin derived peptides from the Cuyaba Dwarf Frog Physalaemus nattereri by off-line LC MALDI MS/MS (2017, International Journal of Mass Spectrometry)
- SpotLight Proteomics: uncovering the hidden blood proteome improves diagnostic power of proteomics (2017, Scientific Reports)
- Peptide de novo sequencing of mixture tandem mass spectra (2016, Proteomics)
- Subset of Kappa and Lambda Germline Sequences Result in Light Chains with a Higher Molecular Mass Phenotype (2015, Journal of Proteome Research)
- Revealing the functional structure of a new PLA2 K49 from Bothriopsis taeniata snake venom employing automatic “de novo” sequencing using CID/HCD/ETD MS/MS analyses (2015, Journal of Proteomics)
- Novel proline-hydroxyproline glycopeptides from the dandelion (Taraxacum officinale Wigg.) flowers: de novo sequencing and biological activity (2015, Plant Science)
- Protein and Peptide Composition of Male Accessory Glands of Apis mellifera Drones Investigated by Mass Spectrometry (2015, PLOS ONE)
- Mass spectrometric de novo sequencing of natural non‐tryptic peptides: comparing peculiarities of collision‐induced dissociation (CID) and high energy collision dissociation (HCD) (2014, Rapid Communications in Mass Spectrometry)
- N-terminal sequence tagging using reliably determined b2 ions: A useful approach to deconvolute tandem mass spectra of co-fragmented peptides in proteomics (2014, Journal of Proteomics)
- Moving Pieces in a Venomic Puzzle: Unveiling Post-translationally Modified Toxins from Tityus serrulatus (2013, Journal of Proteome Research)
- Introducing an Asp-Pro Linker in the Synthesis of Random One-Bead-One-Compound Hexapeptide Libraries Compatible with ESI-MS Analysis (2012, ACS Combinatorial Science)
- De novo Sequencing of Proteins With Mass Spectrometry Using the Differential Scanning Technique (2011, Proteome and Protein Analysis)
- N-terminal tagging strategy forDe Novosequencing of short peptides by ESI-MS/MS and MALDI-MS/MS (2010, Journal of the American Society for Mass Spectrometry)
- De novo sequence analysis and intact mass measurements for characterization of phycocyanin subunit isoforms from the blue‐green alga Aphanizomenon flos‐aquae (2009, Journal of Mass Spectrometry)
- How much peptide sequence information is contained in ion trap tandem mass spectra? (2008, Journal of the American Society for Mass Spectrometry)
- De novo sequencing of peptides secreted by the skin glands of the Caucasian Green Frog Rana ridibunda (2008, Rapid Communications in Mass Spectrometry)
- Multi-spectra peptide sequencing and its applications to multistage mass spectrometry (2008, Bioinformatics)
- Bioactive peptides from the skin of ranid frogs: modern approaches to the mass spectrometric de novo sequencing (2008, Russian Chemical Bulletin)
- Oxidation versus carboxamidomethylation of s-s bond in ranid frog peptides: Pro and contra for de novo MALDI-MS sequencing (2008, Journal of the American Society for Mass Spectrometry)
- On‐target sample preparation of 4‐sulfophenyl isothiocyanate‐derivatized peptides using AnchorChip Targets (2008, Journal of Mass Spectrometry)
- Relative Specificities of Water and Ammonia Losses from Backbone Fragments in Collision-Activated Dissociation (2007, Journal of Proteome Research)
- De Novo Peptide Sequencing and Identification with Precision Mass Spectrometry (2007, Journal of Proteome Research)
- Protein primary structure using orthogonal fragmentation techniques in Fourier transform mass spectrometry (2006, Expert Review of Proteomics)
- Proteomics-Grade de Novo Sequencing Approach (2005, Journal of Proteome Research)
- Database‐independent, database‐dependent, and extended interpretation of peptide mass spectra in VEMS V2.0 (2004, PROTEOMICS)
- De novo sequencing of antimicrobial peptides isolated from the venom glands of the wolf spider Lycosa singoriensis (2004, Journal of Mass Spectrometry)
- “De Novo” Sequencing of Peptides Recovered from In-Gel Digested Proteins by Nanoelectrospray Tandem Mass Spectrometry (2003, Molecular Biotechnology)
- De Novo Peptide Sequencing by Nanoelectrospray Tandem Mass Spectrometry Using Triple Quadrupole and Quadrupole/Time-of-Flight Instruments (2003, Mass Spectrometry of Proteins and Peptides)
- Secondary Losses via γ-Lactam Formation in Hot Electron Capture Dissociation: A Missing Link to Complete de Novo Sequencing of Proteins? (2003, Journal of the American Chemical Society)
- Automatedde novo sequencing of proteins using the differential scanning technique (2001, PROTEOMICS)
- Automated de novo sequencing of proteins by tandem high-resolution mass spectrometry (2000, Proceedings of the National Academy of Sciences)
- Rapid de novo peptide sequencing by a combination of nanoelectrospray, isotopic labeling and a quadrupole/time-of-flight mass spectrometer (1997, Rapid Communications in Mass Spectrometry)
- Error-Tolerant Identification of Peptides in Sequence Databases by Peptide Sequence Tags (1994, Analytical Chemistry)