Max Planck Institute of Molecular Cell Biology and Genetics
Dresden, Germany · 15 authors
Max Planck Institute of Molecular Cell Biology and Genetics (Dresden, Germany): 15 authors and 44 papers in the de novo peptide sequencing catalog.
Papers (44)
- AI proteomics: from protein identification to virtual cells (2026, Nature Methods)
- De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments (2020, Cell Systems)
- Quick and clean: Cracking sentences encoded in E. coli by LC–MS/MS, de novo sequencing, and dictionary search (2019, EuPA Open Proteomics)
- De Novo Peptide Sequencing Reveals a Vast Cyclopeptidome in Human Gut and Other Environments (2019, bioRxiv)
- Top-down analysis of protein samples by de novo sequencing techniques (2016, Bioinformatics)
- De Novo Sequencing of Peptides from Top-Down Tandem Mass Spectra (2015, Journal of Proteome Research)
- De Novo Protein Sequencing by Combining Top-Down and Bottom-Up Tandem Mass Spectra (2014, Journal of Proteome Research)
- Application of de novo sequencing tools to study abiogenic peptide formations by tandem mass spectrometry. The case of homo‐peptides from glutamic acid complicated by substitutions of hydrogen by sodium or potassium atoms (2014, Rapid Communications in Mass Spectrometry)
- UniNovo: a universal tool for de novo peptide sequencing (2013, Bioinformatics)
- Sequencing-Grade De novo Analysis of MS/MS Triplets (CID/HCD/ETD) From Overlapping Peptides (2013, Journal of Proteome Research)
- Multiplex De Novo Sequencing of Peptide Antibiotics (2011, Journal of Computational Biology)
- De novo Sequencing of Proteins With Mass Spectrometry Using the Differential Scanning Technique (2011, Proteome and Protein Analysis)
- Gapped Spectral Dictionaries and Their Applications for Database Searches of Tandem Mass Spectra (2011, Molecular & Cellular Proteomics)
- Multiplex De Novo Sequencing of Peptide Antibiotics (2011, Lecture Notes in Computer Science)
- Gapped Spectral Dictionaries and Their Applications for Database Searches of Tandem Mass Spectra (2010, Lecture Notes in Computer Science)
- Dereplication and de novo sequencing of nonribosomal peptides (2009, Nature Methods)
- Spectral Profiles, a Novel Representation of Tandem Mass Spectra and Their Applications for de Novo Peptide Sequencing and Identification (2009, Molecular & Cellular Proteomics)
- A Ranking-Based Scoring Function for Peptide-Spectrum Matches (2009, Journal of Proteome Research)
- Spectral Dictionaries: Integrating de novo Peptide Sequencing with Database Search of Tandem Mass Spectra (2009, Molecular & Cellular Proteomics)
- How much peptide sequence information is contained in ion trap tandem mass spectra? (2008, Journal of the American Society for Mass Spectrometry)
- Automated de novo protein sequencing of monoclonal antibodies (2008, Nature Biotechnology)
- Simplified validation of borderline hits of database searches (2008, PROTEOMICS)
- Multi-spectra peptide sequencing and its applications to multistage mass spectrometry (2008, Bioinformatics)
- De Novo Sequencing of Nonribosomal Peptides (2008, Lecture Notes in Computer Science)
- Sequence similarity‐driven proteomics in organisms with unknown genomes by LC‐MS/MS and automated de novo sequencing (2007, PROTEOMICS)
- Shotgun Protein Sequencing: Assembly of Peptide Tandem Mass Spectra from Mixtures of Modified Proteins (2007, Molecular & Cellular Proteomics)
- Protein identification by spectral networks analysis (2007, Proceedings of the National Academy of Sciences)
- De Novo Peptide Sequencing and Identification with Precision Mass Spectrometry (2007, Journal of Proteome Research)
- MODELING AND CHARACTERIZATION OF MULTI-CHARGE MASS SPECTRA FOR PEPTIDE SEQUENCING (2006, Journal of Bioinformatics and Computational Biology)
- Rapid Validation of Protein Identifications with the Borderline Statistical Confidence via De Novo Sequencing and MS BLAST Searches (2006, Journal of Proteome Research)
- CHARACTERIZATION OF MULTI-CHARGE MASS SPECTRA FOR PEPTIDE SEQUENCING (2005, Proceedings of the 4th Asia-Pacific Bioinformatics Conference)
- Peptide Sequence Tags for Fast Database Search in Mass-Spectrometry (2005, Journal of Proteome Research)
- InsPecT: Identification of Posttranslationally Modified Peptides from Tandem Mass Spectra (2005, Analytical Chemistry)
- PepNovo: de novo peptide sequencing via probabilistic network modeling (2005, Analytical Chemistry)
- Shotgun Protein Sequencing by Tandem Mass Spectra Assembly (2004, Analytical Chemistry)
- The Power and the Limitations of Cross-Species Protein Identification by Mass Spectrometry-driven Sequence Similarity Searches (2004, Molecular & Cellular Proteomics)
- “De Novo” Sequencing of Peptides Recovered from In-Gel Digested Proteins by Nanoelectrospray Tandem Mass Spectrometry (2003, Molecular Biotechnology)
- De Novo Peptide Sequencing by Nanoelectrospray Tandem Mass Spectrometry Using Triple Quadrupole and Quadrupole/Time-of-Flight Instruments (2003, Mass Spectrometry of Proteins and Peptides)
- MultiTag: Multiple Error-Tolerant Sequence Tag Search for the Sequence-Similarity Identification of Proteins by Mass Spectrometry (2003, Analytical Chemistry)
- Charting the Proteomes of Organisms with Unsequenced Genomes by MALDI-Quadrupole Time-of-Flight Mass Spectrometry and BLAST Homology Searching (2001, Analytical Chemistry)
- Automatedde novo sequencing of proteins using the differential scanning technique (2001, PROTEOMICS)
- De novo peptide sequencing via tandem mass spectrometry (1999, Journal of Computational Biology)
- Rapid de novo peptide sequencing by a combination of nanoelectrospray, isotopic labeling and a quadrupole/time-of-flight mass spectrometer (1997, Rapid Communications in Mass Spectrometry)
- Error-Tolerant Identification of Peptides in Sequence Databases by Peptide Sequence Tags (1994, Analytical Chemistry)